Evidence map›Paper›PMID 33172432›Full record

ArticleBMC ophthalmology2020

Ophthatome™: an integrated knowledgebase of ophthalmic diseases for translating vision research into the clinic.

Praveen Raj, Sushma Tejwani, Dandayudhapani Sudha, B Muthu Narayanan, Chandrasekar Thangapandi, Sankar Das, J Somasekar, Susmithasane Mangalapudi, Durgesh Kumar, Narendra Pindipappanahalli and 5 more

Open access · goldAbstract read
In one paragraph

Article in BMC ophthalmology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Praveen RajMedGenome Labs Limited, 3rd Floor, Narayana Nethralaya Building, Narayana Health City, #258/A, Bommasandra, Hosur Road, Bengaluru, Karnataka, 560099, India.
Sushma TejwaniNarayana Nethralaya, Bengaluru, India.
Dandayudhapani SudhaMedGenome Labs Limited, 3rd Floor, Narayana Nethralaya Building, Narayana Health City, #258/A, Bommasandra, Hosur Road, Bengaluru, Karnataka, 560099, India.
B Muthu NarayananMedGenome Labs Limited, 3rd Floor, Narayana Nethralaya Building, Narayana Health City, #258/A, Bommasandra, Hosur Road, Bengaluru, Karnataka, 560099, India.
Chandrasekar ThangapandiMedGenome Labs Limited, 3rd Floor, Narayana Nethralaya Building, Narayana Health City, #258/A, Bommasandra, Hosur Road, Bengaluru, Karnataka, 560099, India.
Sankar DasNarayana Nethralaya, Bengaluru, India.
J SomasekarMedGenome Labs Limited, 3rd Floor, Narayana Nethralaya Building, Narayana Health City, #258/A, Bommasandra, Hosur Road, Bengaluru, Karnataka, 560099, India.
Susmithasane MangalapudiMedGenome Labs Limited, 3rd Floor, Narayana Nethralaya Building, Narayana Health City, #258/A, Bommasandra, Hosur Road, Bengaluru, Karnataka, 560099, India.
Durgesh KumarMedGenome Labs Limited, 3rd Floor, Narayana Nethralaya Building, Narayana Health City, #258/A, Bommasandra, Hosur Road, Bengaluru, Karnataka, 560099, India.
Narendra PindipappanahalliNarayana Nethralaya, Bengaluru, India.
Rohit ShettyNarayana Nethralaya, Bengaluru, India.
Arkasubhra GhoshGROW lab, Narayana Nethrayala Foundation, Bengaluru, India.
Govindasamy KumaramanickavelGROW lab, Narayana Nethrayala Foundation, Bengaluru, India.
Amitabha ChaudhuriMedGenome Inc, Foster City, USA.
Nagasamy SoumittraMedGenome Labs Limited, 3rd Floor, Narayana Nethralaya Building, Narayana Health City, #258/A, Bommasandra, Hosur Road, Bengaluru, Karnataka, 560099, India. soumi_n@yahoo.co.uk.ORCID http://orcid.org/0000-0002-0401-9601
Narayana Health · INNarayana Nethralaya · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMedical big data analytics has revolutionized the human healthcare system by introducing processes that facilitate rationale clinical decision making, predictive or prognostic modelling of the disease progression and management, disease surveillance, overall impact on public health and research. Although, the electronic medical records (EMR) system is the digital storehouse of rich medical data of a large patient cohort collected over many years, the data lack sufficient structure to be of clinical value for applying deep learning methods and advanced analytics to improve disease management at an individual patient level or for the discipline in general. Ophthatome™ captures data contained in retrospective electronic medical records between September 2012 and January 2018 to facilitate translational vision research through a knowledgebase of ophthalmic diseases.

methodsThe electronic medical records data from Narayana Nethralaya ophthalmic hospital recorded in the MS-SQL database was mapped and programmatically transferred to MySQL. The captured data was manually curated to preserve data integrity and accuracy. The data was stored in MySQL database management system for ease of visualization, advanced search functions and other knowledgebase applications.

resultsOphthatome™ is a comprehensive and accurate knowledgebase of ophthalmic diseases containing curated clinical, treatment and imaging data of 581,466 ophthalmic subjects from the Indian population, recorded between September 2012 and January 2018. Ophthatome™ provides filters and Boolean searches with operators and modifiers that allow selection of specific cohorts covering 524 distinct ophthalmic disease types and 1800 disease sub-types across 35 different anatomical regions of the eye. The availability of longitudinal data for about 300,000 subjects provides additional opportunity to perform clinical research on disease progression and management including drug responses and management outcomes. The knowledgebase captures ophthalmic diseases in a genetically diverse population providing opportunity to study genetic and environmental factors contributing to or influencing ophthalmic diseases.

conclusionOphthatome™ will accelerate clinical, genomic, pharmacogenomic and advanced translational research in ophthalmology and vision sciences.

Indexed as

Eye DiseasesOphthalmologyElectronic Health RecordsHumansKnowledge BasesRetrospective StudiesCurated clinical dataDefined cohortElectronic medical recordsKnowledge baseOphthatomeVision sciences

Identifiers

PMID33172432
PMCPMC7656766
OpenAlexW3103767530

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.