Evidence map›Paper›PMID 33170210›Full record

ArticleNucleic acids research2021

The Zebrafish Information Network: major gene page and home page updates.

Douglas G Howe, Sridhar Ramachandran, Yvonne M Bradford, David Fashena, Sabrina Toro, Anne Eagle, Ken Frazer, Patrick Kalita, Prita Mani, Ryan Martin and 9 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Transcriptomic identification and developmental mapping ofTurkish journal of biology = Turk biyoloji dergisi · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. The Human Disease Ontology 2022 update.Nucleic acids research · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Douglas G HoweThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Sridhar RamachandranThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Yvonne M BradfordThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
David FashenaThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Sabrina ToroThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Anne EagleThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Ken FrazerThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Patrick KalitaThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Prita ManiThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Ryan MartinThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Sierra Taylor MoxonThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Holly PaddockThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Christian PichThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Leyla RuzickaThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Kevin SchaperThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Xiang ShaoThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Amy SingerThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Ceri E Van SlykeThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Monte WesterfieldThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

Funding

Text mining in the CloudU24HG010859 · NHGRI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI CAROL J BULT, PAUL Warren STERNBERG · 2019 to 2026
$42.0M
ZFIN: The Zebrafish Model Organism DatabaseU41HG002659 · NHGRI · UNIVERSITY OF OREGON · PI HOWE, DOUGLAS GORDON · 2011 to 2020
$30.7M
ZFIN: The Zebrafish Model Organism DatabaseU24HG002659 · NHGRI · UNIVERSITY OF OREGON · PI WESTERFIELD, MONTE · 2021 to 2025
$10.8M
NHGRI NIH HHS U24 HG002659NHGRI NIH HHS U24 HG010859NHGRI NIH HHS U41 HG002659
6 · The paper itself

Abstract

The Zebrafish Information Network (ZFIN) (https://zfin.org/) is the database for the model organism, zebrafish (Danio rerio). ZFIN expertly curates, organizes, and provides a wide array of zebrafish genetic and genomic data, including genes, alleles, transgenic lines, gene expression, gene function, mutant phenotypes, orthology, human disease models, gene and mutant nomenclature, and reagents. New features at ZFIN include major updates to the home page and the gene page, the two most used pages at ZFIN. Data including disease models, phenotypes, expression, mutants and gene function continue to be contributed to The Alliance of Genome Resources for integration with similar data from other model organisms.

Indexed as

Databases, GeneticAnimalsAnimals, Genetically ModifiedComputational BiologyData MiningGene ExpressionGenomeGenomicsHumansInternetModels, AnimalMutationPhenotypeZebrafishZebrafish ProteinsZebrafish Proteins

Identifiers

PMID33170210
PMCPMC7778988

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.