Evidence map›Paper›PMID 33168988›Full record

ArticleNature microbiology2021

Reciprocal growth control by competitive binding of nucleotide second messengers to a metabolic switch in Caulobacter crescentus.

Viktoriya Shyp, Badri Nath Dubey, Raphael Böhm, Johannes Hartl, Jutta Nesper, Julia A Vorholt, Sebastian Hiller, Tilman Schirmer, Urs Jenal

Abstract read
PubMed Publisher
In one paragraph

Article in Nature microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Regulation of potassium uptake inJournal of bacteriology · 2024
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Elongation factor P modulatesProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Photoaffinity Capture Compounds to Profile the Magic Spot Nucleotide Interactomes.Angewandte Chemie (International ed. in English) · 2022
    Article
  16. Article
  17. Article
  18. Review
  19. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Viktoriya Shyp *Biozentrum, University of Basel, Basel, Switzerland.
Badri Nath Dubey *Biozentrum, University of Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0002-8626-8918
Raphael BöhmBiozentrum, University of Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0003-2545-997X
Johannes HartlInstitute of Microbiology, ETH Zurich, Zürich, Switzerland.ORCID http://orcid.org/0000-0001-8470-5355
Jutta NesperBiozentrum, University of Basel, Basel, Switzerland.
Julia A VorholtInstitute of Microbiology, ETH Zurich, Zürich, Switzerland.ORCID http://orcid.org/0000-0002-6011-4910
Sebastian HillerBiozentrum, University of Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0002-6709-4684
Tilman SchirmerBiozentrum, University of Basel, Basel, Switzerland. tilman.schirmer@unibas.ch.ORCID http://orcid.org/0000-0001-9512-8346
Urs JenalBiozentrum, University of Basel, Basel, Switzerland. urs.jenal@unibas.ch.ORCID http://orcid.org/0000-0002-1637-3376
University of Basel · CHETH Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteria use small signalling molecules such as (p)ppGpp or c-di-GMP to tune their physiology in response to environmental changes. It remains unclear whether these regulatory networks operate independently or whether they interact to optimize bacterial growth and survival. We report that (p)ppGpp and c-di-GMP reciprocally regulate the growth of Caulobacter crescentus by converging on a single small-molecule-binding protein, SmbA. While c-di-GMP binding inhibits SmbA, (p)ppGpp competes for the same binding site to sustain SmbA activity. We demonstrate that (p)ppGpp specifically promotes Caulobacter growth on glucose, whereas c-di-GMP inhibits glucose consumption. We find that SmbA contributes to this metabolic switch and promotes growth on glucose by quenching the associated redox stress. The identification of an effector protein that acts as a central regulatory hub for two global second messengers opens up future studies on specific crosstalk between small-molecule-based regulatory networks.

Indexed as

Binding, CompetitiveBinding SitesCaulobacter crescentusCyclic GMPGene Expression Regulation, BacterialGlucoseGuanosine PentaphosphateOxidation-ReductionSecond Messenger SystemsSignal TransductionTransferasesbis(3',5')-cyclic diguanylic acidCyclic GMPGlucoseGuanosine PentaphosphateTransferases

Identifiers

PMID33168988
OpenAlexW3101640959

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.