Evidence map›Paper›PMID 33168830›Full record

ArticleNature communications2020

Human endogenous retroviruses form a reservoir of T cell targets in hematological cancers.

Sunil Kumar Saini, Andreas Due Ørskov, Anne-Mette Bjerregaard, Ashwin Unnikrishnan, Staffan Holmberg-Thydén, Annie Borch, Kathrine Valentini Jensen, Govardhan Anande, Amalie Kai Bentzen, Andrea Marion Marquard and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed, 2 pooled it
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 2 syntheses or guidelines pooled it, 94 citations in OpenAlex.

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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 7 institutions in 4 countries.

Sunil Kumar SainiDepartment of Health Technology, Section of Experimental and Translational Immunology, Technical University of Denmark, Kongens Lyngby, Denmark.
Andreas Due ØrskovDepartment of Haematology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.ORCID 0000-0001-9996-7155
Anne-Mette BjerregaardDepartment of Health Technology, Section of Experimental and Translational Immunology, Technical University of Denmark, Kongens Lyngby, Denmark.ORCID 0000-0002-1831-6746
Ashwin UnnikrishnanAdult Cancer Program, Lowy Cancer Research Centre, UNSW, Sydney, NSW, 2052, Australia.ORCID 0000-0001-5168-8755
Staffan Holmberg-ThydénDepartment of Health Technology, Section of Experimental and Translational Immunology, Technical University of Denmark, Kongens Lyngby, Denmark.ORCID 0000-0001-5357-0646
Annie BorchDepartment of Health Technology, Section of Experimental and Translational Immunology, Technical University of Denmark, Kongens Lyngby, Denmark.
Kathrine Valentini JensenDepartment of Health Technology, Section of Experimental and Translational Immunology, Technical University of Denmark, Kongens Lyngby, Denmark.
Govardhan AnandeAdult Cancer Program, Lowy Cancer Research Centre, UNSW, Sydney, NSW, 2052, Australia.
Amalie Kai BentzenDepartment of Health Technology, Section of Experimental and Translational Immunology, Technical University of Denmark, Kongens Lyngby, Denmark.
Andrea Marion MarquardDepartment of Health Technology, Section of Experimental and Translational Immunology, Technical University of Denmark, Kongens Lyngby, Denmark.
Tripti TamhaneDepartment of Health Technology, Section of Experimental and Translational Immunology, Technical University of Denmark, Kongens Lyngby, Denmark.
Marianne Bach TreppendahlDepartment of Haematology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.
Anne Ortved GangDepartment of Haematology, Herlev Hospital, Copenhagen University Hospital, Herlev, Denmark.
Inge Høgh DufvaDepartment of Haematology, Herlev Hospital, Copenhagen University Hospital, Herlev, Denmark.
Zoltan SzallasiDepartment of Health Technology, Section of Bioinformatics, Technical University of Denmark, Kongens Lyngby, Denmark.ORCID 0000-0001-5395-7509
Nicola TernetteNuffield Department of Medicine, University of Oxford, Oxford, UK.ORCID 0000-0002-9283-0743
Anders Gorm PedersenDepartment of Health Technology, Section of Bioinformatics, Technical University of Denmark, Kongens Lyngby, Denmark.ORCID 0000-0001-9650-8965
Aron Charles EklundDepartment of Health Technology, Section of Bioinformatics, Technical University of Denmark, Kongens Lyngby, Denmark.
John PimandaAdult Cancer Program, Lowy Cancer Research Centre, UNSW, Sydney, NSW, 2052, Australia.ORCID 0000-0002-0509-8962
Kirsten GrønbækDepartment of Haematology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.
Sine Reker HadrupDepartment of Health Technology, Section of Experimental and Translational Immunology, Technical University of Denmark, Kongens Lyngby, Denmark. sirha@dtu.dk.ORCID 0000-0002-5937-4344
Technical University of Denmark · DKCancer Institute of New South Wales · AUHerlev Hospital · DKUniversity of Copenhagen · DKBoston Children's Hospital · USCopenhagen University Hospital · DKUniversity of Oxford · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human endogenous retroviruses (HERV) form a substantial part of the human genome, but mostly remain transcriptionally silent under strict epigenetic regulation, yet can potentially be reactivated by malignant transformation or epigenetic therapies. Here, we evaluate the potential for T cell recognition of HERV elements in myeloid malignancies by mapping transcribed HERV genes and generating a library of 1169 potential antigenic HERV-derived peptides predicted for presentation by 4 HLA class I molecules. Using DNA barcode-labeled MHC-I multimers, we find CD8

Indexed as

CD8-Positive T-LymphocytesEndogenous RetrovirusesEpigenesis, GeneticEpitopes, T-LymphocyteGene Expression ProfilingHematologic NeoplasmsHumansImmunotherapyMonitoring, ImmunologicMyeloid CellsNeoplasmsT-LymphocytesEpitopes, T-Lymphocyte

Identifiers

PMID33168830
PMCPMC7653045
OpenAlexW3103755024

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.