Evidence map›Paper›PMID 33168698›Full record

ArticleMolecular and cellular biology2021

Identification of Dominant Transcripts in Oxidative Stress Response by a Full-Length Transcriptome Analysis.

Akihito Otsuki, Yasunobu Okamura, Yuichi Aoki, Noriko Ishida, Kazuki Kumada, Naoko Minegishi, Fumiki Katsuoka, Kengo Kinoshita, Masayuki Yamamoto

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Akihito OtsukiTohoku Medical Megabank Organization, Tohoku University, Sendai, Japan.
Yasunobu OkamuraTohoku Medical Megabank Organization, Tohoku University, Sendai, Japan.
Yuichi AokiTohoku Medical Megabank Organization, Tohoku University, Sendai, Japan.
Noriko IshidaTohoku Medical Megabank Organization, Tohoku University, Sendai, Japan.
Kazuki KumadaTohoku Medical Megabank Organization, Tohoku University, Sendai, Japan.
Naoko MinegishiTohoku Medical Megabank Organization, Tohoku University, Sendai, Japan.
Fumiki KatsuokaTohoku Medical Megabank Organization, Tohoku University, Sendai, Japan.
Kengo KinoshitaTohoku Medical Megabank Organization, Tohoku University, Sendai, Japan.
Masayuki YamamotoTohoku Medical Megabank Organization, Tohoku University, Sendai, Japan masiyamamoto@med.tohoku.ac.jp.ORCID 0000-0002-9073-9436

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Our body responds to environmental stress by changing the expression levels of a series of cytoprotective enzymes/proteins through multilayered regulatory mechanisms, including the KEAP1-NRF2 system. While NRF2 upregulates the expression of many cytoprotective genes, there are fundamental limitations in short-read RNA sequencing (RNA-Seq), resulting in confusion regarding interpreting the effectiveness of cytoprotective gene induction at the transcript level. To precisely delineate isoform usage in the stress response, we conducted independent full-length transcriptome profiling (isoform sequencing; Iso-Seq) analyses of lymphoblastoid cells from three volunteers under normal and electrophilic stress-induced conditions. We first determined the first exon usage in

Indexed as

Alternative SplicingTranscriptomeCell Line, TransformedCell NucleusGene Expression ProfilingHigh-Throughput Nucleotide SequencingHumansKelch-Like ECH-Associated Protein 1LymphocytesMaleatesModels, MolecularNF-E2-Related Factor 2Oxidative StressProtein IsoformsProtein Structure, SecondaryRNA, Messengerdiethyl maleateKEAP1 protein, humanKelch-Like ECH-Associated Protein 1MaleatesNFE2L2 protein, humanNF-E2-Related Factor 2Protein IsoformsRNA, MessengerKEAP1NRF2oxidative stresstranscriptiontranscriptome

Identifiers

PMID33168698
PMCPMC8093496

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.