Evidence map›Paper›PMID 33168025›Full record

ArticleMalaria journal2020

Kelch 13-propeller polymorphisms in Plasmodium falciparum from Jazan region, southwest Saudi Arabia.

Ommer Mohammed Dafalla, Mohammed Alzahrani, Ahmed Sahli, Mohammed Abdulla Al Helal, Mohammad Mohammad Alhazmi, Elsiddig Mohammed Noureldin, Waheed Sideeg Mohamed, Tajeldin Bashir Hamid, Aymen Awad Abdelhaleem, Yahya Ali Hobani and 4 more

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Article in Malaria journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Ommer Mohammed DafallaNational Center for Diseases Prevention and Control, Jazan, Saudi Arabia. omerosa@yahoo.com.ORCID http://orcid.org/0000-0001-8159-4813
Mohammed AlzahraniZoonotic and Vector - Borne Diseases Ministry of Health, Riyadh, Saudi Arabia.
Ahmed SahliZoonotic and Vector - Borne Diseases Ministry of Health, Riyadh, Saudi Arabia.
Mohammed Abdulla Al HelalZoonotic and Vector - Borne Diseases Ministry of Health, Riyadh, Saudi Arabia.
Mohammad Mohammad AlhazmiDepartment of Medicine, King Fahad Central Hospital Ministry of Health, Jazan, Saudi Arabia.
Elsiddig Mohammed NoureldinNational Center for Diseases Prevention and Control, Jazan, Saudi Arabia.
Waheed Sideeg MohamedNational Center for Diseases Prevention and Control, Jazan, Saudi Arabia.
Tajeldin Bashir HamidZoonotic and Vector - Borne Diseases Ministry of Health, Riyadh, Saudi Arabia.
Aymen Awad AbdelhaleemMedical Research Center, Jazan University, Jazan, Saudi Arabia.
Yahya Ali HobaniNational Center for Diseases Prevention and Control, Jazan, Saudi Arabia.
Ommar Ali ArifNational Center for Diseases Prevention and Control, Jazan, Saudi Arabia.
Ibrahim Munagi BokarNational Center for Diseases Prevention and Control, Jazan, Saudi Arabia.
Abdulazai Mohammed HakamiNational Center for Diseases Prevention and Control, Jazan, Saudi Arabia.
Zaki Manawar EisaNational Center for Diseases Prevention and Control, Jazan, Saudi Arabia.
Saudi Center for Disease Prevention and Control · SAMinistry of Health · SAJazan University · SAKing Fahad Central Hospital · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundArtemisinin-based combination therapy (ACT) is recommended at the initial phase for treatment of Plasmodium falciparum, to reduce morbidity and mortality in all countries where malaria is endemic. Polymorphism in portions of P. falciparum gene encoding kelch (K13)-propeller domains is associated with delayed parasite clearance after ACT. Of about 124 different non-synonymous mutations, 46 have been identified in Southeast Asia (SEA), 62 in sub-Saharan Africa (SSA) and 16 in both the regions. This is the first study designed to analyse the prevalence of polymorphism in the P. falciparum k13-propeller domain in the Jazan region of southwest Saudi Arabia, where malaria is endemic.

methodsOne-hundred and forty P. falciparum samples were collected from Jazan region of southwest Saudi Arabia at three different times: 20 samples in 2011, 40 samples in 2016 and 80 samples in 2020 after the implementation of ACT. Plasmodium falciparum kelch13 (k13) gene DNA was extracted, amplified, sequenced, and analysed using a basic local alignment search tool (BLAST).

resultsThis study obtained 51 non-synonymous (NS) mutations in three time groups, divided as follows: 6 single nucleotide polymorphisms (SNPs) '11.8%' in samples collected in 2011 only, 3 (5.9%) in 2011and 2016, 5 (9.8%) in 2011 and 2020, 5 (9.8%) in 2016 only, 8 (15.7%) in 2016 and 2020, 14 (27.5%) in 2020 and 10 (19.6%) in all the groups. The BLAST revealed that the 2011 isolates were genetically closer to African isolates (53.3%) than Asian ones (46.7%). Interestingly, this proportion changed completely in 2020, to become closer to Asian isolates (81.6%) than to African ones (18.4%).

conclusionsDespite the diversity of the identified mutations in the k13-propeller gene, these data did not report widespread artemisinin-resistant polymorphisms in the Jazan region where these samples were collected. Such a process would be expected to increase frequencies of mutations associated with the resistance of ACT.

Indexed as

MutationPolymorphism, Single NucleotidePlasmodium falciparumProtozoan ProteinsSaudi ArabiaSequence Analysis, DNAProtozoan ProteinsJazank13 polymorphismPlasmodium falciparumSaudi Arabia

Identifiers

PMID33168025
PMCPMC7653757
OpenAlexW3100866488

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.