ArticleGenes2020
Assessment of Imputation from Low-Pass Sequencing to Predict Merit of Beef Steers.
Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
30 citing papers in PubMed.
- Article
- Ascertainment Bias in Cattle SNP Arrays and Implications for Multibreed Genomic Predictions.Animal genetics · 2026Article
- Influence of host genetics on the functional composition of the rumen metagenome in beef cattle.Journal of animal science · 2026Article
- Impact of reducing metagenomic sequencing depth on phenotypic prediction accuracy of feed intake and average daily gain in beef cattle.Journal of animal science · 2026Article
- Opportunities and computational challenges in large-scale whole-genome sequencing data analysis.Journal of animal science · 2026Review
- Low-Coverage Whole-Genome Sequencing (lcWGS) in Cattle: Analysis of Potential and Prospects for Application.Animals : an open access journal from MDPI · 2025Review
- Prediction accuracy for feed intake and body weight gain using host genomic and rumen metagenomic data in beef cattle.Genetics, selection, evolution : GSE · 2025Article
- Accurate human genome analysis with element avidity sequencing.BMC bioinformatics · 2025Article
- Article
- A vision of how low-coverage sequence data should contribute to genetic evaluation in the future.Journal of animal science · 2025Article
- A primer on sequencing and genotype imputation in cattle.Journal of animal science · 2025Review
- Short communication: imputation accuracy of host genomic data from metagenomic sequence information.Journal of animal science · 2025Article
- Genomic prediction and genome-wide association study for liver abscesses in crossbred beef cattle.Journal of animal science · 2025Article
- Article
- Accurate genotype imputation from low-coverage whole-genome sequencing data of rainbow trout.G3 (Bethesda, Md.) · 2024Article
- An overview of recent technological developments in bovine genomics.Veterinary and animal science · 2024Review
- Molecular Mechanisms Associated with the Development of the Metritis Complex in Dairy Cattle.Genes · 2024Article
- Recent advances in the genomic resources for sheep.Mammalian genome : official journal of the International Mammalian Genome Society · 2023Review
- Evaluating the potential of (epi)genotype-by-low pass nanopore sequencing in dairy cattle: a study on direct genomic value and methylation analysis.Journal of animal science and biotechnology · 2023Article
- The size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle.Genetics, selection, evolution : GSE · 2023Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Decreasing costs are making low coverage sequencing with imputation to a comprehensive reference panel an attractive alternative to obtain functional variant genotypes that can increase the accuracy of genomic prediction. To assess the potential of low-pass sequencing, genomic sequence of 77 steers sequenced to >10X coverage was downsampled to 1X and imputed to a reference of 946 cattle representing multiple
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.