Evidence map›Paper›PMID 33167398›Full record

ArticleInternational journal of molecular sciences2020

Substitution of the Native Zn(II) with Cd(II), Co(II) and Ni(II) Changes the Downhill Unfolding Mechanism of Ros87 to a Completely Different Scenario.

Rinaldo Grazioso, Sara García-Viñuales, Luigi Russo, Gianluca D'Abrosca, Sabrina Esposito, Laura Zaccaro, Rosa Iacovino, Danilo Milardi, Roberto Fattorusso, Gaetano Malgieri and 1 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
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  4. C(P)XCG Proteins ofInternational journal of molecular sciences · 2024
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  7. A novel of new class II bacteriocin fromFrontiers in microbiology · 2022
    Article
  8. The Physical Chemistry and Chemical Physics (PCCP) Section of theInternational journal of molecular sciences · 2021
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Rinaldo GraziosoDepartment of Environmental, Biological and Pharmaceutical Science and Technology, University of Campania-Luigi Vanvitelli, Via Vivaldi 43, 81100 Caserta, Italy.
Sara García-ViñualesInstitute of Crystallography-CNR, Via Paolo Gaifami 18, 95126 Catania, Italy.ORCID 0000-0002-0018-6170
Luigi RussoDepartment of Environmental, Biological and Pharmaceutical Science and Technology, University of Campania-Luigi Vanvitelli, Via Vivaldi 43, 81100 Caserta, Italy.ORCID 0000-0002-1577-176X
Gianluca D'AbroscaDepartment of Environmental, Biological and Pharmaceutical Science and Technology, University of Campania-Luigi Vanvitelli, Via Vivaldi 43, 81100 Caserta, Italy.ORCID 0000-0002-1786-4249
Sabrina EspositoDepartment of Environmental, Biological and Pharmaceutical Science and Technology, University of Campania-Luigi Vanvitelli, Via Vivaldi 43, 81100 Caserta, Italy.ORCID 0000-0001-6750-7365
Laura ZaccaroInstitute of Biostructures and Bioimaging-CNR (Naples), Via Mezzocannone 16, 80134 Naples, Italy.ORCID 0000-0001-6843-0152
Rosa IacovinoDepartment of Environmental, Biological and Pharmaceutical Science and Technology, University of Campania-Luigi Vanvitelli, Via Vivaldi 43, 81100 Caserta, Italy.
Danilo MilardiInstitute of Crystallography-CNR, Via Paolo Gaifami 18, 95126 Catania, Italy.ORCID 0000-0003-3940-9439
Roberto FattorussoDepartment of Environmental, Biological and Pharmaceutical Science and Technology, University of Campania-Luigi Vanvitelli, Via Vivaldi 43, 81100 Caserta, Italy.
Gaetano MalgieriDepartment of Environmental, Biological and Pharmaceutical Science and Technology, University of Campania-Luigi Vanvitelli, Via Vivaldi 43, 81100 Caserta, Italy.ORCID 0000-0002-4070-9458
Carla IserniaDepartment of Environmental, Biological and Pharmaceutical Science and Technology, University of Campania-Luigi Vanvitelli, Via Vivaldi 43, 81100 Caserta, Italy.ORCID 0000-0002-1504-2479
University of Campania "Luigi Vanvitelli" · ITInstitute of Crystallography · ITInstitute of Biostructure and Bioimaging · IT

Funding

Ministero dell'Istruzione, dell'Università e della Ricerca 2017WBZFHL
6 · The paper itself

Abstract

The structural effects of zinc replacement by xenobiotic metal ions have been widely studied in several eukaryotic and prokaryotic zinc-finger-containing proteins. The prokaryotic zinc finger, that presents a bigger βββαα domain with a larger hydrophobic core with respect to its eukaryotic counterpart, represents a valuable model protein to study metal ion interaction with metallo-proteins. Several studies have been conducted on Ros87, the DNA binding domain of the prokaryotic zinc finger Ros, and have demonstrated that the domain appears to structurally tolerate Ni(II), albeit with important structural perturbations, but not Pb(II) and Hg(II), and it is in vitro functional when the zinc ion is replaced by Cd(II). We have previously shown that Ros87 unfolding is a two-step process in which a zinc binding intermediate converts to the native structure thorough a delicate downhill folding transition. Here, we explore the folding/unfolding behaviour of Ros87 coordinated to Co(II), Ni(II) or Cd(II), by UV-Vis, CD, DSC and NMR techniques. Interestingly, we show how the substitution of the native metal ion results in complete different folding scenarios. We found a two-state unfolding mechanism for Cd-Ros87 whose metal affinity

Indexed as

Repressor ProteinsAgrobacterium tumefaciensAmino Acid SequenceBacterial ProteinsBinding SitesCadmiumCobaltDNA-Binding ProteinsMagnetic Resonance SpectroscopyModels, MolecularNickelProtein FoldingSpectrophotometry, UltravioletThermodynamicsZincZinc FingersBacterial ProteinsCadmiumCobaltDNA-Binding ProteinsNickelRepressor ProteinsZinccadmiumcobaltfolding mechanismnickelzinc finger

Identifiers

PMID33167398
PMCPMC7663847
OpenAlexW3096096625

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.