Evidence map›Paper›PMID 33166411›Full record

ArticleNucleic acids research2020

The TFIIH subunits p44/p62 act as a damage sensor during nucleotide excision repair.

Jamie T Barnett, Jochen Kuper, Wolfgang Koelmel, Caroline Kisker, Neil M Kad

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Jamie T BarnettSchool of Biological Sciences, University of Kent, Canterbury CT2 7NH, UK.
Jochen KuperRudolf Virchow Center for Integrative and Translational Bioimaging, Institute for Structural Biology, University of Würzburg, 97080 Würzburg, Germany.
Wolfgang KoelmelRudolf Virchow Center for Integrative and Translational Bioimaging, Institute for Structural Biology, University of Würzburg, 97080 Würzburg, Germany.
Caroline KiskerRudolf Virchow Center for Integrative and Translational Bioimaging, Institute for Structural Biology, University of Würzburg, 97080 Würzburg, Germany.
Neil M KadSchool of Biological Sciences, University of Kent, Canterbury CT2 7NH, UK.
University of Würzburg · DEUniversity of Kent · GB

Funding

Biotechnology and Biological Sciences Research Council BB/I003460/1Biotechnology and Biological Sciences Research Council BB/M01603X/1Biotechnology and Biological Sciences Research Council BB/M019144/1Biotechnology and Biological Sciences Research Council BB/P00847X/1
6 · The paper itself

Abstract

Nucleotide excision repair (NER) in eukaryotes is orchestrated by the core form of the general transcription factor TFIIH, containing the helicases XPB, XPD and five 'structural' subunits, p62, p44, p34, p52 and p8. Recent cryo-EM structures show that p62 makes extensive contacts with p44 and in part occupies XPD's DNA binding site. While p44 is known to regulate the helicase activity of XPD during NER, p62 is thought to be purely structural. Here, using helicase and adenosine triphosphatase assays we show that a complex containing p44 and p62 enhances XPD's affinity for dsDNA 3-fold over p44 alone. Remarkably, the relative affinity is further increased to 60-fold by dsDNA damage. Direct binding studies show this preference derives from p44/p62's high affinity (20 nM) for damaged ssDNA. Single molecule imaging of p44/p62 complexes without XPD reveals they bind to and randomly diffuse on DNA, however, in the presence of UV-induced DNA lesions these complexes stall. Combined with the analysis of a recent cryo-EM structure, we suggest that p44/p62 acts as a novel DNA-binding entity that enhances damage recognition in TFIIH. This revises our understanding of TFIIH and prompts investigation into the core subunits for an active role during DNA repair and/or transcription.

Indexed as

Binding SitesCryoelectron MicroscopyDNA-Binding ProteinsDNA DamageDNA HelicasesDNA RepairDNA, Single-StrandedHumansMultiprotein ComplexesRNA-Binding ProteinsSingle Molecule ImagingTranscription Factor TFIIHTranscription, GeneticUltraviolet RaysXeroderma Pigmentosum Group D ProteinDNA-Binding ProteinsDNA HelicasesDNA, Single-StrandedERCC2 protein, humanMultiprotein Complexesp44 TFIIH subunit, humanP62 protein, humanRNA-Binding ProteinsTranscription Factor TFIIHXeroderma Pigmentosum Group D ProteinXPBC-ERCC-3 protein

Identifiers

PMID33166411
PMCPMC7736792
OpenAlexW3099795480

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.