ArticleNucleic acids research2021
LegumeIP V3: from models to crops-an integrative gene discovery platform for translational genomics in legumes.
Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Identification of key genes in chickpea transcriptomics and the development of ChickpeaOmicsR as a comprehensive resource to advance breeding and genomic studies.Frontiers in bioinformatics · 2026Article
- LGRPv2: A high-value platform for the advancement of Fabaceae genomics.Plant biotechnology journal · 2025Article
- Transcriptome analysis reveals biosynthesis and regulation of flavonoid in common bean seeds during grain filling.BMC plant biology · 2024Article
- Genome-wide identification, characterization, and expression analysis of m6A readers-YTH domain-containing genes in alfalfa.BMC genomics · 2024Article
- Review
- Development of a knowledge graph framework to ease and empower translational approaches in plant research: a use-case on grain legumes.Frontiers in artificial intelligence · 2023Article
- Signaling by reactive molecules and antioxidants in legume nodules.The New phytologist · 2022Review
- Genetic and Genomic Resources for Soybean Breeding Research.Plants (Basel, Switzerland) · 2022Review
- Genome-Wide Identification of Histone Modification Gene Families in the Model LegumePlants (Basel, Switzerland) · 2022Article
- Recent advancement in OMICS approaches to enhance abiotic stress tolerance in legumes.Frontiers in plant science · 2022Review
- alfaNET: A Database of Alfalfa-Bacterial Stem Blight Protein-Protein Interactions Revealing the Molecular Features of the Disease-causing Bacteria.International journal of molecular sciences · 2021Article
- The 2021 Nucleic Acids Research database issue and the online molecular biology database collection.Nucleic acids research · 2021Article
- Computational Systems Biology of Alfalfa - Bacterial Blight Host-Pathogen Interactions: Uncovering the Complex Molecular Networks for Developing Durable Disease Resistant Crop.Frontiers in plant science · 2021Article
- The CRISPR/Cas9-Mediated Modulation ofFrontiers in plant science · 2021Article
- Application of Synthetic Peptide CEP1 Increases Nutrient Uptake Rates Along Plant Roots.Frontiers in plant science · 2021Article
Corrections and comments
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Authors and funding
5 authors.
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Abstract
Legumes have contributed to human health, sustainable food and feed production worldwide for centuries. The study of model legumes has played vital roles in deciphering key genes, pathways, and networks regulating biological mechanisms and agronomic traits. Along with emerging breeding technology such as genome editing, translation of the knowledge gained from model plants to crops is in high demand. The updated database (V3) was redesigned for translational genomics targeting the discovery of novel key genes in less-studied non-model legume crops by referring to the knowledge gained in model legumes. The database contains genomic data for all 22 included species, and transcriptomic data covering thousands of RNA-seq samples mostly from model species. The rich biological data and analytic tools for gene expression and pathway analyses can be used to decipher critical genes, pathways, and networks in model legumes. The integrated comparative genomic functions further facilitate the translation of this knowledge to legume crops. Therefore, the database will be a valuable resource to identify important genes regulating specific biological mechanisms or agronomic traits in the non-model yet economically significant legume crops. LegumeIP V3 is available free to the public at https://plantgrn.noble.org/LegumeIP. Access to the database does not require login, registration, or password.
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