Evidence map›Paper›PMID 33163847›Full record

ArticleJCO precision oncology2020

Nearly Half of

Brandon J Diessner, Nathan Pankratz, Anthony J Hooten, Lisa Mirabello, Aaron L Sarver, Lauren J Mills, David Malkin, Ava C Kelley, Logan G Spector

Open access · bronzeAbstract read
In one paragraph

Article in JCO precision oncology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Observational
  7. Article
  8. Leveraging Clinical Trial Populations and Data from the Children's Oncology Group for Cancer Survivorship Research.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2022
    Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Brandon J DiessnerDivision of Epidemiology and Clinical Research, Department of Pediatrics, University of Minnesota, Minneapolis, MN.ORCID https://orcid.org/0000-0002-3725-3410
Nathan PankratzDepartment of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, MN.ORCID https://orcid.org/0000-0001-5958-693X
Anthony J HootenDivision of Epidemiology and Clinical Research, Department of Pediatrics, University of Minnesota, Minneapolis, MN.
Lisa MirabelloDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD.
Aaron L SarverMasonic Cancer Center, University of Minnesota, Minneapolis, MN.
Lauren J MillsDivision of Epidemiology and Clinical Research, Department of Pediatrics, University of Minnesota, Minneapolis, MN.ORCID https://orcid.org/0000-0002-8914-2587
David MalkinDivision of Hematology/Oncology and Genetics and Genome Biology Program, The Hospital for Sick Children, Toronto, Ontario, Canada.
Ava C KelleyDepartment of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, MN.ORCID https://orcid.org/0000-0001-8066-412X
Logan G SpectorDivision of Epidemiology and Clinical Research, Department of Pediatrics, University of Minnesota, Minneapolis, MN.ORCID https://orcid.org/0000-0003-2516-0222
University of Minnesota · USNational Cancer Institute · USUniversity of Toronto · CA

Funding

NCTN BIQSFP ANBL1531 (NRT)U10CA180886 · NCI · PUBLIC HEALTH INSTITUTE · PI Douglas S. Hawkins · 2014 to 2026
$390.6M
COG SDMC - Statistics CoreU10CA180899 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TODD A ALONZO · 2014 to 2026
$132.8M
Musculoskeletal Training GrantT32AR050938 · NIAMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI CLOHISY, DENIS R · 2004 to 2020
$3.0M
Genetic Epidemiology of OsteosarcomaU01CA122371 · NCI · UNIVERSITY OF MINNESOTA · PI SPECTOR, LOGAN G. · 2007 to 2010
$1.7M
Bioinformatics approaches to solve the "Missing Driver" problem in solid tumorsR50CA211249 · NCI · UNIVERSITY OF MINNESOTA · PI SARVER, AARON L · 2016 to 2020
$565k
NCI NIH HHS R50 CA211249NCI NIH HHS U01 CA122371NCI NIH HHS U10 CA180886NCI NIH HHS U10 CA180899NIAMS NIH HHS T32 AR050938
6 · The paper itself

Abstract

purposeTo ascertain the prevalence of recurrent de novo variants among 240 pediatric patients with osteosarcoma (OS; age < 20 years) unselected for family history of cancer.

methodsThe identification of de novo variants was implemented in 2 phases. In the first, we identified genes with a rare (minor allele frequency < 0.01) de novo variant in > 1 of the 95 case-parent trios examined by whole-exome sequencing (WES) who passed quality control measures. In phase 2, 145 additional patients with OS were evaluated by targeted sequencing to identify rare de novo variants in genes nominated from phase 1. Recurrent rare variants identified from phase 1 and 2 were verified as either de novo or inherited by Sanger sequencing of affected patients and their parents. Categorical and continuous data were analyzed using Fisher exact test and t tests, respectively.

resultsAmong 95 case-parent trios who underwent WES, we observed 61 de novo variants in 60 genes among 47 patients, with

conclusionApart from

Identifiers

PMID33163847
PMCPMC7608506
OpenAlexW3090984898

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.