Evidence map›Paper›PMID 33163154›Full record

ArticleF1000Research2019

The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR.

Daniel Wibberg, Bérénice Batut, Peter Belmann, Jochen Blom, Frank Oliver Glöckner, Björn Grüning, Nils Hoffmann, Nils Kleinbölting, René Rahn, Maja Rey and 6 more

Open access · goldAbstract read
In one paragraph

Article in F1000Research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.1field-weighted citation impact, top 58% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 2 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 10 institutions in 1 country.

Daniel WibbergCenter for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, 33501, Germany.ORCID 0000-0002-1331-4311
Bérénice BatutBioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, 79110, Germany.ORCID 0000-0001-9852-1987
Peter BelmannCenter for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, 33501, Germany.ORCID 0000-0002-1294-2869
Jochen BlomBioinformatics and Systems Biology, Justus-Liebig-University Giessen, Giessen, 35392, Germany.
Frank Oliver GlöcknerAlfred-Wegener-Institut - Helmholtz Zentrum für Polar- und Meeresforschung and Jacobs University Bremen, Campus Ring 1, Bremen, 28759, Germany.ORCID 0000-0001-8528-9023
Björn GrüningBioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, 79110, Germany.ORCID 0000-0002-3079-6586
Nils HoffmannLeibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Dortmund, 44227, Germany.ORCID 0000-0002-6540-6875
Nils KleinböltingCenter for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, 33501, Germany.
René RahnAlgorithmic Bioinformatics, Department of Mathematics and Computer Science, Freie Universität Berlin, Takustraße 9, Berlin, 14195, Germany.
Maja ReyScientific Databases and Visualization Group, Heidelberg Institute for Theoretical Studies (HITS) gGmbH, Schloss-Wolfsbrunnenweg 35, Heidelberg, 69118, Germany.
Uwe ScholzLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, 06466, Germany.ORCID 0000-0001-6113-3518
Malvika SharanThe Heidelberg Center for Human Bioinformatics (HD-HuB), European Molecular Biology Laboratory, Meyerhofstrasse 1, Heidelberg, 69117, Germany.
Andreas TauchCenter for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, 33501, Germany.
Ulrike TrojahnThe Heidelberg Center for Human Bioinformatics (HD-HuB), European Molecular Biology Laboratory, Meyerhofstrasse 1, Heidelberg, 69117, Germany.
Björn UsadelIBG-2 Plant Sciences, Forschungszentrum Jülich, Jülich, 52428, Germany.
Oliver KohlbacherApplied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen, 72076, Germany.ORCID 0000-0003-1739-4598
Bielefeld University · DEUniversity of Freiburg · DEAlfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung · DEForschungszentrum Jülich · DEFreie Universität Berlin · DEHeidelberg Institute for Theoretical Studies · DEJustus-Liebig-Universität Gießen · DELeibniz Institute for Analytical Sciences - ISAS · DELeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) · DEMax Planck Institute for Developmental Biology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The German Network for Bioinformatics Infrastructure (de.NBI) is a national and academic infrastructure funded by the German Federal Ministry of Education and Research (BMBF). The de.NBI provides (i) service, (ii) training, and (iii) cloud computing to users in life sciences research and biomedicine in Germany and Europe and (iv) fosters the cooperation of the German bioinformatics community with international network structures. The de.NBI members also run the German node (ELIXIR-DE) within the European ELIXIR infrastructure. The de.NBI / ELIXIR-DE training platform, also known as special interest group 3 (SIG 3) 'Training & Education', coordinates the bioinformatics training of de.NBI and the German ELIXIR node. The network provides a high-quality, coherent, timely, and impactful training program across its eight service centers. Life scientists learn how to handle and analyze biological big data more effectively by applying tools, standards and compute services provided by de.NBI. Since 2015, more than 300 training courses were carried out with about 6,000 participants and these courses received recommendation rates of almost 90% (status as of July 2020). In addition to face-to-face training courses, online training was introduced on the de.NBI website in 2016 and guidelines for the preparation of e-learning material were established in 2018. In 2016, ELIXIR-DE joined the ELIXIR training platform. Here, the de.NBI / ELIXIR-DE training platform collaborates with ELIXIR in training activities, advertising training courses via TeSS and discussions on the exchange of data for training events essential for quality assessment on both the technical and administrative levels. The de.NBI training program trained thousands of scientists from Germany and beyond in many different areas of bioinformatics.

Indexed as

Computational BiologyEuropeGermanyHumansBioinformaticsde.NBIde.NBI CloudEducationELIXIRGermanyLife SciencesTraining

Identifiers

PMID33163154
PMCPMC7607484
OpenAlexW2988473665

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.