Evidence map›Paper›PMID 33161528›Full record

ArticleMolecular biology reports2020

Transcriptional reprogramming of major defense-signaling pathways during defense priming and sugarcane-Colletotrichum falcatum interaction.

N M R Ashwin, Leonard Barnabas, Dharmaraj Amalamol, Kana Valiyaveettil Lakshana, Amalraj Ramesh Sundar, Palaniyandi Malathi, Rasappa Viswanathan

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Article in Molecular biology reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

N M R AshwinDivision of Crop Protection, Indian Council of Agricultural Research - Sugarcane Breeding Institute, Coimbatore, India.ORCID http://orcid.org/0000-0003-3538-9645
Leonard BarnabasDivision of Crop Protection, Indian Council of Agricultural Research - Sugarcane Breeding Institute, Coimbatore, India.ORCID http://orcid.org/0000-0002-5950-4153
Dharmaraj AmalamolDivision of Crop Protection, Indian Council of Agricultural Research - Sugarcane Breeding Institute, Coimbatore, India.
Kana Valiyaveettil LakshanaDivision of Crop Protection, Indian Council of Agricultural Research - Sugarcane Breeding Institute, Coimbatore, India.
Amalraj Ramesh SundarDivision of Crop Protection, Indian Council of Agricultural Research - Sugarcane Breeding Institute, Coimbatore, India. rameshsundar_sbi@yahoo.co.in.ORCID http://orcid.org/0000-0001-7061-6976
Palaniyandi MalathiDivision of Crop Protection, Indian Council of Agricultural Research - Sugarcane Breeding Institute, Coimbatore, India.
Rasappa ViswanathanDivision of Crop Protection, Indian Council of Agricultural Research - Sugarcane Breeding Institute, Coimbatore, India.ORCID http://orcid.org/0000-0002-7274-8144
Indian Council of Agricultural Research · INUniversity of Padua · IT

Funding

Council of Scientific and Industrial Research, India (IN) CSIR-UGC JRF fellowship - 313505Department of Science and Technology, Ministry of Science and Technology Sanction F.No. SR/SO/PS-22/10/1 dated 04/01/2011
6 · The paper itself

Abstract

Red rot caused by Colletotrichum falcatum poses a serious threat to sugarcane cultivation in many tropical and sub-tropical countries. Deciphering the molecular network of major defense-signaling pathways in sugarcane cultivars with varying red rot resistance is essential to elucidate the phenomenon of defense priming exerted by resistance inducers. Therefore, in this study, expression pattern of transcripts coding for major defense-signaling pathway regulatory genes was profiled during compatible and incompatible interactions and in response to defense priming using qRT-PCR. Candidate genes that were profiled are involved in or related to hypersensitive response and reactive oxygen species production (HR/ROS), salicylic acid (SA), and jasmonic acid/ethylene (JA/ET) pathways. For compatible and incompatible interactions, susceptible (CoC 671), field tolerant (Co 86032) and resistant (Co 93009) sugarcane cultivars were used, whereas for defense priming, benzothiadiazole (BTH) and the pathogen-associated molecular patterns (PAMPs) of C. falcatum viz., CfEPL1 (eliciting plant response-like) and CfPDIP1 (plant defense inducing protein) were used in CoC 671 cultivar. Results indicated that the master regulator of defense pathways, nonexpressor of pathogenesis-related genes 1 (NPR1) was highly upregulated in incompatible interactions (in both Co 86032 and Co 93009) than the compatible interaction along with SA pathway-associated genes. Similarly, in response to defense priming with BTH, CfEPL1 and CfPDIP1, only the SA pathway-associated genes showed considerable upregulation at 0 h post inoculation (hpi) and other intermittent time points. Overall, this study showed that SA-mediated defense pathway is the most predominant pathway reprogrammed during priming with BTH, CfEPL1 and CfPDIP1 and substantiated the earlier findings that these agents indeed induce systemic resistance against red rot of sugarcane.

Indexed as

Gene Expression Regulation, PlantColletotrichumCyclopentanesDisease ResistanceEthylenesHost-Pathogen InteractionsOxylipinsPlant DiseasesPlant ProteinsReactive Oxygen SpeciesSaccharumSalicylic AcidSignal TransductionCyclopentanesethyleneEthylenesjasmonic acidOxylipinsPlant ProteinsReactive Oxygen SpeciesSalicylic AcidCfEPL1CfPDIP1Colletotrichum falcatumDefense-related genesPrimingSugarcane

Identifiers

PMID33161528
OpenAlexW3102205183

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.