Evidence map›Paper›PMID 33160938›Full record

ArticleEuropean journal of pharmacology2021

Computational drug re-purposing targeting the spike glycoprotein of SARS-CoV-2 as an effective strategy to neutralize COVID-19.

Himanshu G Toor, Devjani I Banerjee, Soumya Lipsa Rath, Siddhi A Darji

Open access · greenAbstract read
In one paragraph

Article in European journal of pharmacology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Design, Synthesis and Biological Exploration of NovelInternational journal of molecular sciences · 2024
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  6. Observational
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  9. Review
  10. A fractal scaling analysis of the SARS-CoV-2 genome sequence.Biomedical signal processing and control · 2022
    Article
  11. Article
  12. Review
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Himanshu G ToorP.G. Department of Genetics, Ashok and Rita Patel Institute of Integrated Study and Research in Biotechnology and Allied Sciences (ARIBAS), Charutar Vidya Mandal University, P.O. Box No. 61, New Vallabh Vidyanagar, Vitthal Udyognagar, 388121, Anand, Gujarat, India; Sardar Patel University, Gujarat, India. Electronic address: himanshutoor@aribas.edu.in.
Devjani I BanerjeeDr. Vikram Sarabhai Institute of Cell and Molecular Biology, Faculty of Science, The Maharaja Sayajirao University of Baroda, Pratapganj, Vadodara, 390002, Gujarat, India. Electronic address: devjani.chak-cmb@msubaroda.ac.in.
Soumya Lipsa RathNational Institute of Technology, Warangal, Telangana, 506004, India. Electronic address: slrath@nitw.ac.in.
Siddhi A DarjiDr. Vikram Sarabhai Institute of Cell and Molecular Biology, Faculty of Science, The Maharaja Sayajirao University of Baroda, Pratapganj, Vadodara, 390002, Gujarat, India. Electronic address: siddhiadarji@gmail.com.
Maharaja Sayajirao University of Baroda · INNational Institute of Technology Warangal · INThe Charutar Vidya Mandal (CVM) University

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

COVID-19 has intensified into a global pandemic with over a million deaths worldwide. Experimental research analyses have been implemented and executed with the sole rationale to counteract SARS-CoV-2, which has initiated potent therapeutic strategy development in coherence with computational biology validation focusing on the characterized viral drug targets signified by proteomic and genomic data. Spike glycoprotein is one of such potential drug target that promotes viral attachment to the host cellular membrane by binding to its receptor ACE-2 via its Receptor-Binding Domain (RBD). Multiple Sequence alignment and relative phylogenetic analysis revealed significant sequential disparities of SARS-CoV-2 as compared to previously encountered SARS-CoV and MERS-CoV strains. We implemented a drug re-purposing approach wherein the inhibitory efficacy of a cluster of thirty known drug candidates comprising of antivirals, antibiotics and phytochemicals (selection contingent on their present developmental status in underway clinical trials) was elucidated by subjecting them to molecular docking analyses against the spike protein RBD model (developed using homology modelling and validated using SAVES server 5.0) and the composite trimeric structures of spike glycoprotein of SARS-CoV-2. Our results indicated that Camostat, Favipiravir, Tenofovir, Raltegravir and Stavudine showed significant interactions with spike RBD of SARS-CoV-2. Proficient bioavailability coupled with no predicted in silico toxicity rendered them as prospective alternatives for designing and development of novel combinatorial therapy formulations for improving existing treatment regimes to combat COVID-19.

Indexed as

SARS-CoV-2AmidesAnti-Bacterial AgentsAntiviral AgentsBinding SitesCOVID-19 Drug TreatmentDrug RepositioningEstersGabexateGuanidinesMolecular Docking SimulationPhytochemicalsProtein BindingPyrazinesRaltegravir PotassiumSpike Glycoprotein, CoronavirusAmidesAnti-Bacterial AgentsAntiviral AgentscamostatEstersfavipiravirGabexateGuanidinesPhytochemicalsPyrazinesRaltegravir PotassiumSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2StavudineTenofovirCoronavirusCOVID-19Drug repurposingMolecular dockingSARS-CoVSARS-CoV-2

Identifiers

PMID33160938
PMCPMC7644434
OpenAlexW3096477555

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.