Evidence map›Paper›PMID 33160353›Full record

ArticleBMC medical genomics2020

Genomic analysis of circular RNAs in heart.

Kunzhe Dong, Xiangqin He, Huabo Su, David J R Fulton, Jiliang Zhou

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC medical genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
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  12. Involvement of circRNAs in the Development of Heart Failure.International journal of molecular sciences · 2022
    Review
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  15. Role of circRNA in pathogenesis of AlzheimerZhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2022
    Article
  16. Article
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  19. Circular RNAs and Cardiovascular Regeneration.Frontiers in cardiovascular medicine · 2021
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kunzhe DongDepartment of Pharmacology and Toxicology, Medical College of Georgia, Augusta University, 1459 Laney Walker Blvd, Augusta, GA, 30912, USA.
Xiangqin HeDepartment of Pharmacology and Toxicology, Medical College of Georgia, Augusta University, 1459 Laney Walker Blvd, Augusta, GA, 30912, USA.
Huabo SuDepartment of Pharmacology and Toxicology, Medical College of Georgia, Augusta University, 1459 Laney Walker Blvd, Augusta, GA, 30912, USA.
David J R FultonDepartment of Pharmacology and Toxicology, Medical College of Georgia, Augusta University, 1459 Laney Walker Blvd, Augusta, GA, 30912, USA.
Jiliang ZhouDepartment of Pharmacology and Toxicology, Medical College of Georgia, Augusta University, 1459 Laney Walker Blvd, Augusta, GA, 30912, USA. jizhou@augusta.edu.ORCID 0000-0002-2375-4636
Augusta University · US

Funding

Neddylation and cardiac protein quality controlR01HL124248 · NHLBI · AUGUSTA UNIVERSITY · PI SU, HUABO · 2014 to 2024
$4.1M
The novel smooth muscle-specific lncRNA CARMN is a critical regulator of smooth muscle phenotypeR01HL149995 · NHLBI · AUGUSTA UNIVERSITY · PI ZHOU, JILIANG · 2020 to 2023
$2.0M
American Heart Association Established Investigator Award 17EIA33460468American Heart Association postdoctoral fellowship 19POST34450071American Heart Association Transformational Project Award 19TPA34910181NHLBI NIH HHS R01 HL124248NHLBI NIH HHS R01 HL149995
6 · The paper itself

Abstract

backgroundHeart failure is a leading cause of human morbidity and mortality. Circular RNAs (circRNAs) are a newly discovered class of RNA that have been found to have important physiological and pathological roles. In the current study, we de novo analyzed existing whole transcriptome data from 5 normal and 5 dilated cardiomyopathy (DCM) human heart samples and compared the results with circRNAs that have been previously reported in human, mouse and rat hearts.

resultsOur analysis identifies a list of cardiac circRNAs that are reliably detected in multiple studies. We have also defined the top 30 most abundant circRNAs in healthy human hearts which include some with previously unrecognized cardiac roles such as circHIPK3_11 and circTULP4_1. We further found that many circRNAs are dysregulated in DCM, particularly transcripts originating from DCM-related gene loci, such as TTN and RYR2. In addition, we predict the potential of cardiac circRNAs to sponge miRNAs that have reported roles in heart disease. We found that circALMS1_6 has the highest potential to bind miR-133, a microRNA that can regulate cardiac remodeling. Interestingly, we detected a novel class of circRNAs, referred to as read-though (rt)-circRNAs which are produced from exons of two different neighboring genes. Specifically, rt-circRNAs from SCAF8 and TIAM2 were observed to be dysregulated in DCM and these rt-circRNAs have the potential to sponge multiple heart disease-related miRNAs.

conclusionsIn summary, this study provides a valuable resource for exploring the function of circRNAs in human heart disease and establishes a functional paradigm for identifying novel circRNAs in other tissues.

Indexed as

TranscriptomeAnimalsBase SequenceCardiac MyosinsCardiomyopathy, DilatedDatabases, GeneticHeart VentriclesHumansMiceMicroRNAsMyocardiumMyosin Heavy ChainsRatsRNA, CircularRNA, MessengerRNA-SeqCardiac MyosinsMicroRNAsMYH6 protein, humanMYH7 protein, humanMyosin Heavy ChainsRNA, CircularRNA, MessengerCircular RNADilated cardiomyopathymiRNA spongeRead-through circRNA

Identifiers

PMID33160353
PMCPMC7648966
OpenAlexW3104623527

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.