Evidence map›Paper›PMID 33160317›Full record

ArticleBMC evolutionary biology2020

Avian phenotypic convergence is subject to low genetic constraints based on genomic evidence.

Yu-Chi Chen, Hao-Chih Kuo, Wen-Sui Lo, Chih-Ming Hung

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Convergent genetic adaptation ofFrontiers in molecular biosciences · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Yu-Chi ChenBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.ORCID 0000-0001-8787-0700
Hao-Chih KuoBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.ORCID 0000-0002-3448-8716
Wen-Sui LoDepartment of Evolutionary Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.
Chih-Ming HungBiodiversity Research Center, Academia Sinica, Taipei, Taiwan. cmhung@gate.sinica.edu.tw.ORCID 0000-0002-4785-6370
Biodiversity Research Center, Academia Sinica · TWMax Planck Institute for Developmental Biology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPhenotypic convergence between distinct species provides an opportunity to examine the predictability of genetic evolution. Unrelated species sharing genetic underpinnings for phenotypic convergence suggests strong genetic constraints, and thus high predictability of evolution. However, there is no clear big picture of the genomic constraints on convergent evolution. Genome-based phylogenies have confirmed many cases of phenotypic convergence in birds, making them a good system for examining genetic constraints in phenotypic convergence. In this study, we used hierarchical genomic approaches to estimate genetic constraints in three convergent avian traits: nocturnality, raptorial behavior and foot-propelled diving.

resultsPhylogeny-based hypothesis tests and positive selection tests were applied to compare 16 avian genomes, representing 14 orders, and identify genes with strong convergence signals. We found 43 adaptively convergent genes (ACGs) associated with the three phenotypic convergence cases and assessed genetic constraints in all three cases, from (amino acid) site mutations to genetic pathways. We found that the avian orders shared few site mutations in the ACGs that contributed to the convergent phenotypes, and that these ACGs were not enriched in any genetic pathways. In addition, different pairs of orders with convergent foot-propelled diving or raptorial behaviors shared few ACGs. We also found that closely related orders that shared foot-propelled diving behavior did not share more ACGs than did distinct orders, suggesting that convergence among these orders could not be explained by their initial genomic backgrounds.

conclusionsOur analyses of three avian convergence events suggest low constraints for phenotypic convergence across multiple genetic levels, implying that genetic evolution is unpredictable at the phylogenetic level of avian order. Ours is one of first studies to apply hierarchical genomic examination to multiple avian convergent cases to assess the genetic constraints in life history trait evolution.

Indexed as

Evolution, MolecularPhenotypePhylogenyAnimalsBehavior, AnimalBirdsGenomicsSelection, GeneticConvergent evolutionFoot-propelled diving birdsGenetic constraintGenomic comparisonNocturnal birdsRaptors

Identifiers

PMID33160317
PMCPMC7648321
OpenAlexW3097846434

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.