Evidence map›Paper›PMID 33159551›Full record

ArticleCurrent genetics2021

Chromatin regulatory genes differentially interact in networks to facilitate distinct GAL1 activity and noise profiles.

David F Moreno, Murat Acar

Open access · greenAbstract read
In one paragraph

Article in Current genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

David F MorenoDepartment of Molecular Cellular and Developmental Biology, Yale University, 219 Prospect Street, New Haven, CT, 06511, USA.ORCID http://orcid.org/0000-0002-7417-8050
Murat AcarDepartment of Molecular Cellular and Developmental Biology, Yale University, 219 Prospect Street, New Haven, CT, 06511, USA. murat.acar@yale.edu.ORCID http://orcid.org/0000-0003-3289-8751
Yale University · US

Funding

Systems analysis of phenotypic switch in control of cancer invasionU54CA209992 · NCI · YALE UNIVERSITY · PI LEVCHENKO, ANDRE · 2016 to 2021
$10.1M
Microfluids-enabled Quantitative Systems Biology Approaches to Construct Gene Networks Regulating Yeast Lifespan and Genetic Noise Dynamics During AgingR01GM127870 · NIGMS · YALE UNIVERSITY · PI ACAR, MURAT · 2018 to 2022
$1.5M
NCI NIH HHS U54 CA209992NIGMS NIH HHS R01 GM127870NIGMS NIH HHS R01GM127870NIH HHS U54CA209992
6 · The paper itself

Abstract

Controlling chromatin state constitutes a major regulatory step in gene expression regulation across eukaryotes. While global cellular features or processes are naturally impacted by chromatin state alterations, little is known about how chromatin regulatory genes interact in networks to dictate downstream phenotypes. Using the activity of the canonical galactose network in yeast as a model, here, we measured the impact of the disruption of key chromatin regulatory genes on downstream gene expression, genetic noise and fitness. Using Trichostatin A and nicotinamide, we characterized how drug-based modulation of global histone deacetylase activity affected these phenotypes. Performing epistasis analysis, we discovered phenotype-specific genetic interaction networks of chromatin regulators. Our work provides comprehensive insights into how the galactose network activity is affected by protein interaction networks formed by chromatin regulators.

Indexed as

Epistasis, GeneticChromatinGalactokinaseGene Expression Regulation, FungalGene Regulatory NetworksGenes, RegulatorHistone DeacetylasesHydroxamic AcidsNiacinamideSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsChromatinGAL1 protein, S cerevisiaeGalactokinaseHistone DeacetylasesHydroxamic AcidsNiacinamideSaccharomyces cerevisiae Proteinstrichostatin AChromatin regulationChromatin stateGAL1GAL networkGene expressionNicotinamideNoiseTSAYeast

Identifiers

PMID33159551
PMCPMC8035145
OpenAlexW3095239471

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.