Evidence map›Paper›PMID 33159476›Full record

ArticleCytometry. Part A : the journal of the International Society for Analytical Cytology2021

A Paradigm Shift in Nuclear Chromatin Interpretation: From Qualitative Intuitive Recognition to Quantitative Texture Analysis of Breast Cancer Cell Nuclei.

Hye-Kyung Lee, Cho-Hee Kim, Subrata Bhattacharjee, Hyeon-Gyun Park, Deekshitha Prakash, Heung-Kook Choi

Open access · hybridAbstract read
In one paragraph

Article in Cytometry. Part A : the journal of the International Society for Analytical Cytology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Hye-Kyung LeeDepartment of Pathology, College of Medicine, Eulji University, Daejeon, Korea.ORCID 0000-0002-4678-1274
Cho-Hee KimDepartment of Digital Anti-Aging Healthcare, u-AHRC, Inje University, Gimhae, Korea.ORCID 0000-0003-0943-7084
Subrata BhattacharjeeDepartment of Computer Engineering, u-AHRC, Inje University, Gimhae, Korea.ORCID 0000-0002-6036-6915
Hyeon-Gyun ParkDepartment of Computer Engineering, u-AHRC, Inje University, Gimhae, Korea.ORCID 0000-0003-4318-3487
Deekshitha PrakashDepartment of Computer Engineering, u-AHRC, Inje University, Gimhae, Korea.ORCID 0000-0002-7013-4720
Heung-Kook ChoiDepartment of Computer Engineering, u-AHRC, Inje University, Gimhae, Korea.ORCID 0000-0002-1372-7052
Inje University · KREulji University · KR

Funding

Ministry of Trade, Industry and Energy P0002072
6 · The paper itself

Abstract

Assessing the pattern of nuclear chromatin is essential for pathological investigations. However, the interpretation of nuclear pattern is subjective. In this study, we performed the texture analysis of nuclear chromatin in breast cancer samples to determine the nuclear pleomorphism score thereof. We used three different algorithms for extracting high-level texture features: the gray-level co-occurrence matrix (GLCM), gray-level run length matrix (GLRLM), and gray-level size zone matrix (GLSZM). Using these algorithms, 12 GLCM, 11 GLRLM, and 16 GLSZM features were extracted from three scores of breast carcinoma (Scores 1-3). Classification accuracy was assessed using the support vector machine (SVM) and k-nearest neighbor (KNN) classification models. Three features of GLCM, 11 of GLRLM, and 12 of GLSZM were consistent across the three nuclear pleomorphism scores of breast cancer. Comparing Scores 1 and 3, the GLSZM feature large zone high gray-level emphasis showed the largest difference among breast cancer nuclear scores among all features of the three algorithms. The SVM and KNN classifiers showed favorable results for all three algorithms. A multiclass classification was performed to compare and distinguish between the scores of breast cancer. Texture features of nuclear chromatin can provide useful information for nuclear scoring. However, further validation of the correlations of histopathologic features, and standardization of the texture analysis process, are required to achieve better classification results. © 2021 The Authors. Cytometry Part A published by Wiley Periodicals LLC on behalf of International Society for Advancement of Cytometry.

Indexed as

Breast NeoplasmsAlgorithmsCell NucleusChromatinFemaleHumansSupport Vector MachineChromatinbreast carcinomaclassificationhistopathologicnuclear chromatinpatterntexture analysis

Identifiers

PMID33159476
PMCPMC8359278
OpenAlexW3095973296

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.