Evidence map›Paper›PMID 33159288›Full record

ArticleForensic science, medicine, and pathology2021

DNA isolated from formalin-fixed paraffin-embedded healthy tissue after 30 years of storage can be used for forensic studies.

Katarina Vitošević, Miloš Todorović, Živana Slović, Tatjana Varljen, Stevan Matić, Danijela Todorović

Abstract read
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In one paragraph

Article in Forensic science, medicine, and pathology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
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  8. Article
  9. DNA Data Storage.Biotech (Basel (Switzerland)) · 2023
    Review
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Katarina VitoševićFaculty of Medical Sciences, Department of Forensic Medicine, University of Kragujevac, Kragujevac, Serbia.
Miloš TodorovićFaculty of Medical Sciences, Department of Forensic Medicine, University of Kragujevac, Kragujevac, Serbia.
Živana SlovićFaculty of Medical Sciences, Department of Forensic Medicine, University of Kragujevac, Kragujevac, Serbia.
Tatjana VarljenInstitute of Forensic Medicine, Faculty of Medicine, University of Belgrade, Belgrade, Serbia.
Stevan MatićInstitute of Pathology and Forensic Medicine, Military Medical Academy, Belgrade, Serbia.
Danijela TodorovićFaculty of Medical Sciences, Department of Genetics, University of Kragujevac, Kragujevac, Serbia. dtodorovic197@gmail.com.
University of Kragujevac · RSMilitary Medical Academy · RSUniversity of Belgrade · RS

Funding

University of Kragujevac Faculty of Medical Sciences JP:05/13
6 · The paper itself

Abstract

Tissue formalin fixation and paraffin embedding (FFPE) is a standard method for long-term preservation and morphological and molecular analysis. The aim of this study was to analyze the effect of storage time on the integrity of DNA isolated from three different healthy FFPE tissues. DNA was isolated from FFPE heart, liver and brain tissues obtained from autopsy and archived from 1988 to 2017 using two different methods of DNA isolation: phenol-chloroform-isoamyl alcohol (PCI) and PureLink Genomic DNA Kit. The quantification and purity of DNA was measured spectrophotometrically at 260 nm and 280 nm. The quality of isolated DNA was evaluated by PCR amplification of GPD1 (150 bp), ACTB (262 bp) and RPL4 (407 bp) genes. The histomorphological characteristics of FFPE tissues were not significantly changed during 30 years of storage. Higher yield (272.9 ± 10.3 µg) and purity (A260/280 = 2.05) of DNA was obtained using the PCI method for DNA isolation from FFPE liver tissue. The PCI extraction method showed reproducible and consistent results in PCR amplification of all of three examined genes. The GPD1 gene can be amplified up to 30 years, the ACTB gene in the same samples up to 26 years and the RPL4 gene up to 6 years of storage in FFPE blocks. Although the best yield and purity of isolated DNA (using both isolation methods) was obtained from FFPE liver tissue, the DNA with the most preserved integrity was obtained from brain tissue archived up to 30 years. This is the first report using long-term archived healthy FFPE tissues (up to 30 years) that shows that the DNA isolated from these tissues is of preserved integrity and can be used in molecular autopsy.

Indexed as

Brain ChemistrySpecimen HandlingActinsAdultDNAForensic MedicineFormaldehydeGlycerolphosphate DehydrogenaseHumansLiverMiddle AgedMyocardiumParaffin EmbeddingPolymerase Chain ReactionRibosomal ProteinsTime FactorsActinsDNAFormaldehydeGlycerolphosphate DehydrogenaseGPD1L protein, humanribosomal protein L4Ribosomal ProteinsAutopsyDNA degradationDNA isolationFormalin-fixed paraffin-embedded tissuePCR

Identifiers

PMID33159288
OpenAlexW3097855666

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.