Evidence map›Paper›PMID 33159068›Full record

ArticleNature communications2020

Client proximity enhancement inside cellular membrane-less compartments governed by client-compartment interactions.

Daesun Song, Yongsang Jo, Jeong-Mo Choi, Yongwon Jung

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
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  10. Reaction-Diffusion Patterning of DNA-Based Artificial Cells.Journal of the American Chemical Society · 2022
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Current Understanding of Molecular Phase Separation in Chromosomes.International journal of molecular sciences · 2021
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Daesun SongDepartment of Chemistry, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.ORCID 0000-0002-6206-2034
Yongsang JoDepartment of Chemistry, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
Jeong-Mo ChoiNatural Science Research Institute, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.ORCID 0000-0003-2656-4851
Yongwon JungDepartment of Chemistry, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea. ywjung@kaist.ac.kr.ORCID 0000-0002-1034-9797
Korea Advanced Institute of Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Membrane-less organelles or compartments are considered to be dynamic reaction centers for spatiotemporal control of diverse cellular processes in eukaryotic cells. Although their formation mechanisms have been steadily elucidated via the classical concept of liquid-liquid phase separation, biomolecular behaviors such as protein interactions inside these liquid compartments have been largely unexplored. Here we report quantitative measurements of changes in protein interactions for the proteins recruited into membrane-less compartments (termed client proteins) in living cells. Under a wide range of phase separation conditions, protein interaction signals were vastly increased only inside compartments, indicating greatly enhanced proximity between recruited client proteins. By employing an in vitro phase separation model, we discovered that the operational proximity of clients (measured from client-client interactions) could be over 16 times higher than the expected proximity from actual client concentrations inside compartments. We propose that two aspects should be considered when explaining client proximity enhancement by phase separation compartmentalization: (1) clients are selectively recruited into compartments, leading to concentration enrichment, and more importantly, (2) recruited clients are further localized around compartment-forming scaffold protein networks, which results in even higher client proximity.

Indexed as

Cell MembraneCytoplasmHeLa CellsHumansKineticsOrganellesProtein BindingProteinsProtein TransportProteins

Identifiers

PMID33159068
PMCPMC7648067
OpenAlexW3097524553

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.