Evidence map›Paper›PMID 33158944›Full record

ArticleJournal of virology2021

The SARS-CoV-2 Conserved Macrodomain Is a Mono-ADP-Ribosylhydrolase.

Yousef M O Alhammad, Maithri M Kashipathy, Anuradha Roy, Jean-Philippe Gagné, Peter McDonald, Philip Gao, Louis Nonfoux, Kevin P Battaile, David K Johnson, Erik D Holmstrom and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 138 citations in OpenAlex.

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  9. bioRxiv : the preprint server for biology · 2025
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  15. Biomolecular NMR assignments · 2025
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  20. Review

36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Yousef M O AlhammadDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas, USA.
Maithri M KashipathyProtein Structure Laboratory, University of Kansas, Lawrence, Kansas, USA.
Anuradha RoyHigh Throughput Screening Laboratory, University of Kansas, Lawrence, Kansas, USA.
Jean-Philippe GagnéDepartment of Molecular Biology, Medical Biochemistry and Pathology, Laval University Cancer Research Center, Québec City, Quebec, Canada.
Peter McDonaldHigh Throughput Screening Laboratory, University of Kansas, Lawrence, Kansas, USA.
Philip GaoProtein Production Group, University of Kansas, Lawrence, Kansas, USA.
Louis NonfouxDepartment of Molecular Biology, Medical Biochemistry and Pathology, Laval University Cancer Research Center, Québec City, Quebec, Canada.
Kevin P BattaileNYX, New York Structural Biology Center, Upton, New York, USA.
David K JohnsonMolecular Graphics and Modeling Laboratory and the Computational Chemical Biology Core, University of Kansas, Lawrence, Kansas, USA.
Erik D HolmstromDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas, USA.
Guy G PoirierDepartment of Molecular Biology, Medical Biochemistry and Pathology, Laval University Cancer Research Center, Québec City, Quebec, Canada.
Scott LovellProtein Structure Laboratory, University of Kansas, Lawrence, Kansas, USA.
Anthony R FehrDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas, USA arfehr@ku.edu.ORCID 0000-0003-1560-1573
University of Kansas · USUniversité Laval · CANew York Structural Biology Center · US

Funding

Synthetic Chemical Biology CoreP20GM113117 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI KIM, HYUNJOON · 2016 to 2025
$23.9M
Protein Structure Laboratory P30GM110761 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI HANZLIK, ROBERT P · 2014 to 2018
$5.6M
Determining mechanisms of innate immune modulation by ADP-ribosylationR35GM138029 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI Anthony R Fehr · 2020 to 2026
$2.7M
Investigating How ADP-ribosylation Impacts Innate Immunity During Coronavirus InfectionK22AI134993 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI FEHR, ANTHONY R · 2019 to 2020
$270k
NIAID NIH HHS K22 AI134993NIGMS NIH HHS P20 GM113117NIGMS NIH HHS P30 GM110761NIGMS NIH HHS R35 GM138029
6 · The paper itself

Abstract

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and other SARS-related CoVs encode 3 tandem macrodomains within nonstructural protein 3 (nsp3). The first macrodomain, Mac1, is conserved throughout CoVs and binds to and hydrolyzes mono-ADP-ribose (MAR) from target proteins. Mac1 likely counters host-mediated antiviral ADP-ribosylation, a posttranslational modification that is part of the host response to viral infections. Mac1 is essential for pathogenesis in multiple animal models of CoV infection, implicating it as a virulence factor and potential therapeutic target. Here, we report the crystal structure of SARS-CoV-2 Mac1 in complex with ADP-ribose. SARS-CoV-2, SARS-CoV, and Middle East respiratory syndrome coronavirus (MERS-CoV) Mac1 domains exhibit similar structural folds, and all 3 proteins bound to ADP-ribose with affinities in the low micromolar range. Importantly, using ADP-ribose-detecting binding reagents in both a gel-based assay and novel enzyme-linked immunosorbent assays (ELISAs), we demonstrated de-MARylating activity for all 3 CoV Mac1 proteins, with the SARS-CoV-2 Mac1 protein leading to a more rapid loss of substrate than the others. In addition, none of these enzymes could hydrolyze poly-ADP-ribose. We conclude that the SARS-CoV-2 and other CoV Mac1 proteins are MAR-hydrolases with similar functions, indicating that compounds targeting CoV Mac1 proteins may have broad anti-CoV activity.

Indexed as

Adenosine Diphosphate RiboseAmino Acid SequenceCoronavirusCrystallography, X-RayHumansHydrolysisKineticsN-Glycosyl HydrolasesProtein BindingProtein DomainsSARS-CoV-2Viral Nonstructural ProteinsAdenosine Diphosphate RiboseADP-ribosylarginine hydrolaseN-Glycosyl HydrolasesViral Nonstructural ProteinsADP-ribosecoronavirusmacrodomainmono-ADP-ribosepoly-ADP-riboseSARS-CoV-2

Identifiers

PMID33158944
PMCPMC7925111
OpenAlexW3095507416

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.