Evidence map›Paper›PMID 33155727›Full record

ArticleJournal of leukocyte biology2021

MDS-associated SF3B1 mutations enhance proinflammatory gene expression in patient blast cells.

Daniel A Pollyea, Hyun Min Kim, Brett M Stevens, Frank Fang-Yao Lee, Chelsea Harris, Brenna R Hedin, Jennifer R Knapp, Brian P O'Connor, Craig T Jordan, Eric M Pietras and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of leukocyte biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Daniel A PollyeaDivision of Hematology, Department of Medicine, University of Colorado School of Medicine, Aurora, Colorado, USA.
Hyun Min KimDivision of Medical Oncology, Department of Medicine, University of Colorado School of Medicine, Aurora, Colorado, USA.
Brett M StevensDivision of Hematology, Department of Medicine, University of Colorado School of Medicine, Aurora, Colorado, USA.
Frank Fang-Yao LeeDepartment of Immunology and Genomic Medicine, National Jewish Health, Denver, Colorado, USA.
Chelsea HarrisDepartment of Immunology and Genomic Medicine, National Jewish Health, Denver, Colorado, USA.
Brenna R HedinDepartment of Immunology and Genomic Medicine, National Jewish Health, Denver, Colorado, USA.
Jennifer R KnappCenter for Genes, Environment and Health, National Jewish Health, Denver, Colorado, USA.
Brian P O'ConnorDepartment of Immunology and Genomic Medicine, National Jewish Health, Denver, Colorado, USA.
Craig T JordanDivision of Hematology, Department of Medicine, University of Colorado School of Medicine, Aurora, Colorado, USA.
Eric M PietrasDivision of Hematology, Department of Medicine, University of Colorado School of Medicine, Aurora, Colorado, USA.
Aik Choon TanDivision of Medical Oncology, Department of Medicine, University of Colorado School of Medicine, Aurora, Colorado, USA.
Scott AlperDepartment of Immunology and Genomic Medicine, National Jewish Health, Denver, Colorado, USA.ORCID 0000-0002-2411-2037
National Jewish Health · USUniversity of Colorado Denver · USMoffitt Cancer Center · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Temporal regulation of pulmonary inflammation by MyD88 alternative pre-mRNA splicingR01HL148335 · NHLBI · NATIONAL JEWISH HEALTH · PI ALPER, SCOTT · 2019 to 2022
$2.3M
Toxin-induced alternative mRNA splicing in Toll-like receptor signaling pathwaysR01ES025161 · NIEHS · NATIONAL JEWISH HEALTH · PI ALPER, SCOTT · 2016 to 2020
$1.8M
Regulation of innate immunity by a novel protein interaction networkR21AI132827 · NIAID · NATIONAL JEWISH HEALTH · PI ALPER, SCOTT · 2019 to 2020
$450k
Role of RNA splicing factor U2AF1 in regulating hematopoietic stem cell inflammation responses.F31HL138754 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI RABE, JENNIFER L · 2017 to 2018
$60k
NCI NIH HHS P30 CA046934NHLBI NIH HHS R01 HL148335NIAID NIH HHS R21 AI132827NIEHS NIH HHS R01 ES025161
6 · The paper itself

Abstract

Two factors known to contribute to the development of myelodysplastic syndrome (MDS) and other blood cancers are (i) somatically acquired mutations in components of the spliceosome and (ii) increased inflammation. Spliceosome genes, including SF3B1, are mutated at high frequency in MDS and other blood cancers; these mutations are thought to be neomorphic or gain-of-function mutations that drive disease pathogenesis. Likewise, increased inflammation is thought to contribute to MDS pathogenesis; inflammatory cytokines are strongly elevated in these patients, with higher levels correlating with worsened patient outcome. In the current study, we used RNAseq to analyze pre-mRNA splicing and gene expression changes present in blast cells isolated from MDS patients with or without SF3B1 mutations. We determined that SF3B1 mutations lead to enhanced proinflammatory gene expression in these cells. Thus, these studies suggest that SF3B1 mutations could contribute to MDS pathogenesis by enhancing the proinflammatory milieu in these patients.

Indexed as

Gene ExpressionMutationCytokinesHumansInflammation MediatorsMyelodysplastic SyndromesPhosphoproteinsRNA SplicingRNA Splicing FactorsSpliceosomesStem CellsCytokinesInflammation MediatorsPhosphoproteinsRNA Splicing FactorsSF3B1 protein, humaninflammationpre-mRNA splicingRNAseqspliceosome

Identifiers

PMID33155727
PMCPMC8612809
OpenAlexW3096868467

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.