Evidence map›Paper›PMID 33154194›Full record

ArticleAging2020

Three-gene risk model in papillary renal cell carcinoma: a robust likelihood-based survival analysis.

Yutao Wang, Kexin Yan, Jiaxing Lin, Jianfeng Wang, Zhenhua Zheng, Xinxin Li, Zhixiong Hua, Yuepeng Bu, Jianxiu Shi, Siqing Sun and 3 more

Open access · greenAbstract read
In one paragraph

Article in Aging, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

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  8. Identification and Validation of a Novel Prognostic Gene Model for Colorectal Cancer.Computational and mathematical methods in medicine · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Yutao WangDepartment of Urology, The First Hospital of China Medical University, Shenyang 110001, Liaoning, China.
Kexin YanDepartment of Dermatology, The First Hospital of China Medical University, Shenyang 110001, Liaoning, China.
Jiaxing LinDepartment of Urology, The First Hospital of China Medical University, Shenyang 110001, Liaoning, China.
Jianfeng WangDepartment of Urology, The First Hospital of China Medical University, Shenyang 110001, Liaoning, China.
Zhenhua ZhengDepartment of Urology, The First Hospital of China Medical University, Shenyang 110001, Liaoning, China.
Xinxin LiDepartment of Urology, The First Hospital of China Medical University, Shenyang 110001, Liaoning, China.
Zhixiong HuaDepartment of Urology, The First Hospital of China Medical University, Shenyang 110001, Liaoning, China.
Yuepeng BuDepartment of Urology, The First Hospital of China Medical University, Shenyang 110001, Liaoning, China.
Jianxiu ShiDepartment of Urology, The First Hospital of China Medical University, Shenyang 110001, Liaoning, China.
Siqing SunDepartment of Urology, The First Hospital of China Medical University, Shenyang 110001, Liaoning, China.
Xuejie LiDepartment of Urology, The First Hospital of China Medical University, Shenyang 110001, Liaoning, China.
Yang LiuDepartment of Urology, The First Hospital of China Medical University, Shenyang 110001, Liaoning, China.
Jianbin BiDepartment of Urology, The First Hospital of China Medical University, Shenyang 110001, Liaoning, China.
First Hospital of China Medical University · CNChina Medical University · CNState Key Laboratory of Robotics

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPapillary renal cell carcinoma (PRCC) accounts for 15% of all renal cell carcinomas. The molecular mechanisms of renal papillary cell carcinoma remain unclear, and treatments for advanced disease are limited.

resultWe built the computing model as follows: Risk score = 1.806 *

conclusionWe conducted a study to develop a three gene model for predicting prognosis in patients with papillary renal cell carcinoma. Our findings may provide candidate biomarkers for prognosis that have important implications for understanding the therapeutic targets of papillary renal cell carcinoma.

methodGene expression matrix and clinical data were obtained from TCGA (The Cancer Genome Atlas), GSE26574, GSE2048, and GSE7023. Prognostic factors were identified using "survival" and "rbsurv" packages, and a risk score was constructed using Multivariate Cox regression analysis. The co-expression networks of the factors in model were constructed using the "WGCNA" package. The co-expression genes of factors were enriched and displayed the biological process. Based on this robust risk model, immune cells infiltration proportions and tumor mutation burdens were compared between risk groups. Subsequently, using the PRCC cell line, the role of TPX2 was determined by Cell proliferation assay, 5-Ethynyl-20-deoxyuridine assay and Transwell assay.

Indexed as

Gene Expression ProfilingTranscriptomeBiomarkers, TumorCarcinoma, Renal CellCell Cycle ProteinsCell Line, TumorCell MovementCell ProliferationDatabases, GeneticGene Expression Regulation, NeoplasticHumansKidney NeoplasmsMacrophagesMembrane Transport ProteinsMicrotubule-Associated ProteinsModels, GeneticBiomarkers, TumorCell Cycle ProteinsMembrane Transport ProteinsMicrotubule-Associated ProteinsSLC6A20 protein, humanThioredoxin Reductase 2TPX2 protein, humanTXNRD2 protein, humanimmune infiltrationpapillary renal cell carcinoma (PRCC)robust risk modeltumor mutation burden (TMB)weighted gene co-expression network analysis (WGCNA)

Identifiers

PMID33154194
PMCPMC7695399
OpenAlexW3095477496

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.