Evidence map›Paper›PMID 33153777›Full record

ReviewTrends in pharmacological sciences2020

Single-Cell Techniques and Deep Learning in Predicting Drug Response.

Zhenyu Wu, Patrick J Lawrence, Anjun Ma, Jian Zhu, Dong Xu, Qin Ma

Abstract readReview
In one paragraph

Review in Trends in pharmacological sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Applications of Artificial Intelligence in Drug Repurposing.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  10. Liquid biopsies in cancer.Molecular biomedicine · 2025
    Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zhenyu WuDepartment of Biomedical Informatics, The Ohio State University, Columbus, OH 43210, USA.
Patrick J LawrenceDepartment of Biomedical Informatics, The Ohio State University, Columbus, OH 43210, USA.
Anjun MaDepartment of Biomedical Informatics, The Ohio State University, Columbus, OH 43210, USA.
Jian ZhuDepartment of Pathology, The Ohio State University, Columbus, OH 43210, USA.
Dong XuDepartment of Electrical Engineering and Computer Science, and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA.
Qin MaDepartment of Biomedical Informatics, The Ohio State University, Columbus, OH 43210, USA. Electronic address: qin.ma@osumc.edu.

Funding

Multi-view self-supervised deep learning for biological sequences and beyondR35GM126985 · NIGMS · UNIVERSITY OF SOUTH FLORIDA · PI DONG XU · 2018 to 2026
$3.8M
Investigation of Latency Promoting Genes (LPGs) in HIV Oral Reservoir CellsR01DE025447 · NIDCR · UNIVERSITY OF ROCHESTER · PI ZHU, JIAN · 2015 to 2019
$1.9M
Construction of cell specific gene co-regulations signatures based on single cell transcriptomics analysisR01GM131399 · NIGMS · SOUTH DAKOTA STATE UNIVERSITY · PI MA, QIN · 2018 to 2021
$1.3M
Role of FACT Proteins in Regulating HIV Transcription and LatencyR01AI150448 · NIAID · OHIO STATE UNIVERSITY · PI ZHU, JIAN · 2019 to 2019
$300k
NIDCR NIH HHS R01 DE025447NIGMS NIH HHS R01 GM131399NIGMS NIH HHS R35 GM126985
6 · The paper itself

Abstract

Rapidly developing single-cell sequencing analyses produce more comprehensive profiles of the genomic, transcriptomic, and epigenomic heterogeneity of tumor subpopulations than do traditional bulk sequencing analyses. Moreover, single-cell techniques allow the response of a tumor to drug exposure to be more thoroughlyinvestigated. Deep learning (DL) models have successfully extracted features from complex bulk sequence data to predict drug responses. We review recent innovations in single-cell technologies and DL-based approaches related to drug sensitivity predictions. We believe that, by using insights from bulk sequencedata, deep transfer learning (DTL) can facilitate the use of single-cell data for training superior DL-based drug prediction models.

Indexed as

Computational BiologyDeep LearningPharmaceutical PreparationsEpigenomicsGenomicsPharmacologyPharmaceutical Preparationsdeep learning modelsdeep transfer learning frameworkdrug responsesingle-cell technologies

Identifiers

PMID33153777
PMCPMC7669610

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.