Evidence map›Paper›PMID 33153169›Full record

ArticleCells2020

Frequent Germline and Somatic Single Nucleotide Variants in the Promoter Region of the Ribosomal RNA Gene in Japanese Lung Adenocarcinoma Patients.

Riuko Ohashi, Hajime Umezu, Ayako Sato, Tatsuya Abé, Shuhei Kondo, Kenji Daigo, Seijiro Sato, Norikazu Hara, Akinori Miyashita, Takeshi Ikeuchi and 17 more

Open access · goldAbstract read
In one paragraph

Article in Cells, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Mechanisms of ribosomopathy and phase separation-related ribosomopathy.Journal of Zhejiang University. Science. B · 2025
    Review
  2. Assessing Human Ribosomal DNA Variation and Its Association With Phenotypic Outcomes.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  3. Article
  4. Article
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 7 institutions in 2 countries.

Riuko OhashiHistopathology Core Facility, Niigata University Faculty of Medicine, Niigata 951-8510, Japan.ORCID 0000-0001-5820-7870
Hajime UmezuDivision of Pathology, Niigata University Medical & Dental Hospital, Niigata 951-8520, Japan.
Ayako SatoDivision of Molecular and Diagnostic Pathology, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan.
Tatsuya AbéDivision of Molecular and Diagnostic Pathology, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan.
Shuhei KondoDivision of Molecular and Diagnostic Pathology, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan.
Kenji DaigoDepartment of Protein-Protein Interaction Research, Institute for Advanced Medical Sciences, Nippon Medical School, Kawasaki, Kanagawa 211-8533, Japan.
Seijiro SatoDivision of Thoracic and Cardiovascular Surgery, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan.
Norikazu HaraDepartment of Molecular Genetics, Brain Research Institute, Niigata University, Niigata 951-8510, Japan.ORCID 0000-0001-8525-3469
Akinori MiyashitaDepartment of Molecular Genetics, Brain Research Institute, Niigata University, Niigata 951-8510, Japan.ORCID 0000-0003-2508-9649
Takeshi IkeuchiDepartment of Molecular Genetics, Brain Research Institute, Niigata University, Niigata 951-8510, Japan.
Teiichi MotoyamaDivision of Molecular and Diagnostic Pathology, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan.
Masashi KishiNeuroscience Laboratory, Research Institute, Nozaki Tokushukai Hospital, Osaka 574-0074, Japan.
Tadahiro NagaokaDivision for Therapies against Intractable Diseases, Institute for Comprehensive Medical Science, Fujita Health University, Aichi 470-1192, Japan.ORCID 0000-0002-9391-0243
Keiko HoriuchiDepartment of Protein-Protein Interaction Research, Institute for Advanced Medical Sciences, Nippon Medical School, Kawasaki, Kanagawa 211-8533, Japan.
Atsushi ShigaDepartment of Clinical Laboratory, Niigata Cancer Center hospital, Niigata 951-8560, Japan.
Shujiro OkudaDivision of Bioinformatics, Graduate School of Medical and Dental Sciences, Niigata University, Niigata 951-8510, Japan.
Tomoki SekiyaDepartment of Respiratory Medicine and Infectious Diseases, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan.
Aya OhtsuboDepartment of Respiratory Medicine and Infectious Diseases, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan.
Kosuke IchikawaDepartment of Respiratory Medicine and Infectious Diseases, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan.
Hiroshi KagamuDepartment of Respiratory Medicine and Infectious Diseases, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan.
Toshiaki KikuchiDepartment of Respiratory Medicine and Infectious Diseases, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan.ORCID 0000-0001-7428-1245
Satoshi WatanabeDepartment of Respiratory Medicine and Infectious Diseases, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan.
Jun-Ichi TanumaDivision of Oral Pathology, Department of Tissue Regeneration and Reconstruction, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8514, Japan.
Peter SchramlDepartment of Pathology and Molecular Pathology, University of Zurich and University Hospital Zurich, CH-8091 Zurich, Switzerland.
Takao HamakuboDepartment of Protein-Protein Interaction Research, Institute for Advanced Medical Sciences, Nippon Medical School, Kawasaki, Kanagawa 211-8533, Japan.ORCID 0000-0003-1353-8902
Masanori TsuchidaDivision of Thoracic and Cardiovascular Surgery, Niigata University Graduate School of Medical and Dental Sciences, Niigata 951-8510, Japan.
Yoichi AjiokaHistopathology Core Facility, Niigata University Faculty of Medicine, Niigata 951-8510, Japan.
Niigata University · JPNippon Medical School · JPFujita Health University · JPFukuoka Tokushukai Hospital · JPNiigata Cancer Center Hospital · JPNiigata University Medical and Dental Hospital · JPUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribosomal RNA (rRNA), the most abundant non-coding RNA species, is a major component of the ribosome. Impaired ribosome biogenesis causes the dysfunction of protein synthesis and diseases called "ribosomopathies," including genetic disorders with cancer risk. However, the potential role of rRNA gene (rDNA) alterations in cancer is unknown. We investigated germline and somatic single-nucleotide variants (SNVs) in the rDNA promoter region (positions -248 to +100, relative to the transcription start site) in 82 lung adenocarcinomas (LUAC). Twenty-nine tumors (35.4%) carried germline SNVs, and eight tumors (9.8%) harbored somatic SNVs. Interestingly, the presence of germline SNVs between positions +1 and +100 (

Indexed as

Promoter Regions, GeneticAdenocarcinoma of LungAgedAsian PeopleBase SequenceCell Line, TumorDactinomycinDatabases, GeneticFemaleGenetic LociGerm-Line MutationHumansLung NeoplasmsMaleMiddle AgedMultivariate AnalysisDactinomycinRNA, Ribosomallung adenocarcinomaprognosisrDNAribosome biogenesissingle nucleotide variant

Identifiers

PMID33153169
PMCPMC7692307
OpenAlexW3097515209

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.