Evidence map›Paper›PMID 33151679›Full record

ArticleACS chemical biology2020

Genome Mining and Metabolomics Uncover a Rare d-Capreomycidine Containing Natural Product and Its Biosynthetic Gene Cluster.

James H Tryon, Jennifer C Rote, Li Chen, Matthew T Robey, Marvin M Vega, Wan Cheng Phua, William W Metcalf, Kou-San Ju, Neil L Kelleher, Regan J Thomson

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Untargeted Metabolomic Analysis in Endolymphatic Sac Luminal Fluid from Patients with Meniere's Disease.Journal of the Association for Research in Otolaryngology : JARO · 2023
    Article
  5. Article
  6. Enzymatic CJournal of the American Chemical Society · 2021
    Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

James H TryonDepartment of Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Jennifer C RoteDepartment of Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Li ChenDepartment of Microbiology, The Ohio State University, Columbus, Ohio 43210, United States.
Matthew T RobeyDepartment of Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Marvin M VegaDepartment of Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Wan Cheng PhuaDepartment of Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
William W MetcalfCarl R. Woese Institute for Genomic Biology and The Department of Microbiology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States.ORCID 0000-0002-0182-0671
Kou-San JuDepartment of Microbiology, The Ohio State University, Columbus, Ohio 43210, United States.ORCID 0000-0003-0438-6740
Neil L KelleherDepartment of Chemistry, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0002-8815-3372
Regan J ThomsonDepartment of Chemistry, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0001-5546-4038
Northwestern University · USThe Ohio State University · USUniversity of Illinois Urbana-Champaign · US

Funding

Mass Spectrometric Studies of Thiotemplate BiosynthesisR01AT009143 · NCCIH · NORTHWESTERN UNIVERSITY · PI NEIL L KELLEHER, NANCY P KELLER · 2016 to 2026
$4.2M
NCCIH NIH HHS R01 AT009143
6 · The paper itself

Abstract

We report the metabolomics-driven genome mining of a new cyclic-guanidino incorporating non-ribosomal peptide synthetase (NRPS) gene cluster and full structure elucidation of its associated hexapeptide product, faulknamycin. Structural studies unveiled that this natural product contained the previously unknown (

Indexed as

Multigene FamilyArginineBacterial ProteinsBiosynthetic PathwaysGenomicsMetabolomicsPeptide SynthasesStreptomycesArginineBacterial Proteinscapreomycidinenon-ribosomal peptide synthasePeptide Synthases

Identifiers

PMID33151679
PMCPMC7830813
OpenAlexW3096434189

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.