Evidence map›Paper›PMID 33151380›Full record

ReviewCurrent genetics2021

Scaling gene expression for cell size control and senescence in Saccharomyces cerevisiae.

Yuping Chen, Bruce Futcher

Open access · hybridAbstract readReview
In one paragraph

Review in Current genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Cell growth and the cell cycle: New insights about persistent questions.BioEssays : news and reviews in molecular, cellular and developmental biology · 2022
    Review
  5. Mad3 modulates the GScience advances · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Yuping ChenDepartment of Chemical and Systems Biology, Stanford Medicine, Stanford, CA, 94305-5174, USA.
Bruce FutcherDepartment of Microbiology and Immunology, Stony Brook University, Stony Brook, NY, 11794-5222, USA. bfutcher@gmail.com.ORCID http://orcid.org/0000-0002-1012-9022
Stanford Medicine · USStony Brook University · US

Funding

Scaling of transcript abundance with cell size and the commitment to cell divisionR01GM127542 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI BRUCE Bruce FUTCHER · 2019 to 2026
$2.6M
NIGMS NIH HHS R01 GM127542NIH HHS GM133996
6 · The paper itself

Abstract

Cells divide with appropriate frequency by coupling division to growth-that is, cells divide only when they have grown sufficiently large. This process is poorly understood, but has been studied using cell size mutants. In principle, mutations affecting cell size could affect the mean size ("set-point" mutants), or they could affect the variability of sizes ("homeostasis" mutants). In practice, almost all known size mutants affect set-point, with little effect on size homeostasis. One model for size-dependent division depends on a size-dependent gene expression program: Activators of cell division are over-expressed at larger and larger sizes, while inhibitors are under-expressed. At sufficiently large size, activators overcome inhibitors, and the cell divides. Amounts of activators and inhibitors determine the set-point, but the gene expression program (the rate at which expression changes with cell size) determines the breadth of the size distribution (homeostasis). In this model, set-point mutants identify cell cycle activators and inhibitors, while homeostasis mutants identify regulators that couple expression of activators and inhibitors to size. We consider recent results suggesting that increased cell size causes senescence, and suggest that at very large sizes, an excess of DNA binding proteins leads to size induced senescence.

Indexed as

Cell SizeCell CycleCell DivisionCellular SenescenceDNA-Binding ProteinsGene Expression Regulation, FungalSaccharomyces cerevisiaeDNA-Binding ProteinsCell divisionCell sizeG1 S transitionSize controlStartYeast

Identifiers

PMID33151380
PMCPMC7886820
OpenAlexW3096214562

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.