Evidence map›Paper›PMID 33149959›Full record

ArticleBiomedical optics express2020

High compression deep learning based single-pixel hyperspectral macroscopic fluorescence lifetime imaging

M Ochoa, A Rudkouskaya, R Yao, P Yan, M Barroso, X Intes

Abstract read
In one paragraph

Article in Biomedical optics express, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Deep learning in macroscopic diffuse optical imaging.Journal of biomedical optics · 2022
    Review
  10. Deep Learning in Biomedical Optics.Lasers in surgery and medicine · 2021
    Review
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

M OchoaDepartment of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.ORCID https://orcid.org/0000-0001-6427-4447
A RudkouskayaDepartment of Molecular and Cellular Physiology, Albany Medical College, Albany, NY 12208, USA.ORCID https://orcid.org/0000-0002-3632-9743
R YaoDepartment of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
P YanDepartment of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
M BarrosoDepartment of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
X IntesDepartment of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.ORCID https://orcid.org/0000-0001-5868-4845

Funding

Role of tumor heterogeneity on receptor engagementR01CA207725 · NCI · RENSSELAER POLYTECHNIC INSTITUTE · PI BARROSO, MARGARIDA, CORR, DAVID THOMAS · 2017 to 2021
$3.0M
In vivo Macroscopic Fluorescence Lifetime Molecular Optical ImagingR01CA250636 · NCI · RENSSELAER POLYTECHNIC INSTITUTE · PI BARROSO, MARGARIDA, INTES, XAVIER · 2020 to 2023
$2.9M
Photon-counting X-ray and Optical Tomography for Preclinical Cancer ResearchR01CA237267 · NCI · RENSSELAER POLYTECHNIC INSTITUTE · PI BARROSO, MARGARIDA, INTES, XAVIER · 2019 to 2023
$2.9M
Time-Resolved Wide-Field Molecular Optical TomographyR01EB019443 · NIBIB · RENSSELAER POLYTECHNIC INSTITUTE · PI INTES, XAVIER · 2015 to 2018
$1.7M
NIBIB NIH HHS R01 EB019443
6 · The paper itself

Abstract

Single pixel imaging frameworks facilitate the acquisition of high-dimensional optical data in biological applications with photon starved conditions. However, they are still limited to slow acquisition times and low pixel resolution. Herein, we propose a convolutional neural network for fluorescence lifetime imaging with compressed sensing at high compression (NetFLICS-CR), which enables in vivo applications at enhanced resolution, acquisition and processing speeds, without the need for experimental training datasets. NetFLICS-CR produces intensity and lifetime reconstructions at 128 × 128 pixel resolution over 16 spectral channels while using only up to 1% of the required measurements, therefore reducing acquisition times from ∼2.5 hours at 50% compression to ∼3 minutes at 99% compression. Its potential is demonstrated in silico, in vitro and for mice in vivo through the monitoring of receptor-ligand interactions in liver and bladder and further imaging of intracellular delivery of the clinical drug Trastuzumab to HER2-positive breast tumor xenografts. The data acquisition time and resolution improvement through NetFLICS-CR, facilitate the translation of single pixel macroscopic flurorescence lifetime imaging (SP-MFLI) for in vivo monitoring of lifetime properties and drug uptake.

Identifiers

PMID33149959
PMCPMC7587256

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.