Evidence map›Paper›PMID 33149253›Full record

ArticleScientific reports2020

Coxsackievirus infection induces a non-canonical autophagy independent of the ULK and PI3K complexes.

Yasir Mohamud, Junyan Shi, Hui Tang, Pinhao Xiang, Yuan Chao Xue, Huitao Liu, Chen Seng Ng, Honglin Luo

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 27 citations in OpenAlex.

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  20. CRISPR/Cas9-Mediated Knockout of theFrontiers in cellular and infection microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Yasir MohamudCentre for Heart Lung Innovation, St. Paul's Hospital, 1081 Burrard St., Vancouver, BC, V6Z 1Y6, Canada.
Junyan ShiCentre for Heart Lung Innovation, St. Paul's Hospital, 1081 Burrard St., Vancouver, BC, V6Z 1Y6, Canada.
Hui TangCentre for Heart Lung Innovation, St. Paul's Hospital, 1081 Burrard St., Vancouver, BC, V6Z 1Y6, Canada.
Pinhao XiangCentre for Heart Lung Innovation, St. Paul's Hospital, 1081 Burrard St., Vancouver, BC, V6Z 1Y6, Canada.
Yuan Chao XueCentre for Heart Lung Innovation, St. Paul's Hospital, 1081 Burrard St., Vancouver, BC, V6Z 1Y6, Canada.
Huitao LiuCentre for Heart Lung Innovation, St. Paul's Hospital, 1081 Burrard St., Vancouver, BC, V6Z 1Y6, Canada.
Chen Seng NgCentre for Heart Lung Innovation, St. Paul's Hospital, 1081 Burrard St., Vancouver, BC, V6Z 1Y6, Canada.
Honglin LuoCentre for Heart Lung Innovation, St. Paul's Hospital, 1081 Burrard St., Vancouver, BC, V6Z 1Y6, Canada. honglin.luo@hli.ubc.ca.
University of British Columbia · CASt. Paul's Hospital · CAShandong Provincial Hospital · CN

Funding

CIHR Doctoral FellowshipCIHR PJT 159546CIHR PJT-173318
6 · The paper itself

Abstract

Coxsackievirus B3 (CVB3) is a single-stranded positive RNA virus that usurps cellular machinery, including the evolutionarily anti-viral autophagy pathway, for productive infections. Despite the emergence of double-membraned autophagosome-like vesicles during CVB3 infection, very little is known about the mechanism of autophagy initiation. In this study, we investigated the role of established autophagy factors in the initiation of CVB3-induced autophagy. Using siRNA-mediated gene-silencing and CRISPR-Cas9-based gene-editing in culture cells, we discovered that CVB3 bypasses the ULK1/2 and PI3K complexes to trigger autophagy. Moreover, we found that CVB3-induced LC3 lipidation occurred independent of WIPI2 and the transmembrane protein ATG9 but required components of the late-stage ubiquitin-like ATG conjugation system including ATG5 and ATG16L1. Remarkably, we showed the canonical autophagy factor ULK1 was cleaved through the catalytic activity of the viral proteinase 3C. Mutagenesis experiments identified the cleavage site of ULK1 after Q524, which separates its N-terminal kinase domain from C-terminal substrate binding domain. Finally, we uncovered PI4KIIIβ (a PI4P kinase), but not PI3P or PI5P kinases as requisites for CVB3-induced LC3 lipidation. Taken together, our studies reveal that CVB3 initiates a non-canonical form of autophagy that bypasses ULK1/2 and PI3K signaling pathways to ultimately converge on PI4KIIIβ- and ATG5-ATG12-ATG16L1 machinery.

Indexed as

AutophagyAutophagy-Related Protein-1 HomologAutophagy-Related ProteinsCoxsackievirus InfectionsHEK293 CellsHeLa CellsHumansIntracellular Signaling Peptides and ProteinsMembrane ProteinsPhosphate-Binding ProteinsPhosphatidylinositol 3-KinasesPhosphotransferases (Alcohol Group Acceptor)Protein Serine-Threonine KinasesViral ProteasesATG16L1 protein, humanAutophagy-Related Protein-1 HomologAutophagy-Related ProteinsIntracellular Signaling Peptides and ProteinsMembrane ProteinsPhosphate-Binding ProteinsPhosphatidylinositol 3-KinasesPhosphotransferases (Alcohol Group Acceptor)PI4KB protein, humanProtein Serine-Threonine KinasesULK1 protein, humanUlk2 protein, humanViral ProteasesWIPI2 protein, human

Identifiers

PMID33149253
PMCPMC7642411
OpenAlexW3094721542

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.