Evidence map›Paper›PMID 33149234›Full record

ArticleScientific reports2020

Alterations of the gut bacterial microbiota in rhesus macaques with SIV infection and on short- or long-term antiretroviral therapy.

Summer Siddiqui, Duran Bao, Lara Doyle-Meyers, Jason Dufour, Yuntao Wu, Yao-Zhong Liu, Binhua Ling

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
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  11. Chronic Opioid Administration is Associated with Prevotella-dominated Dysbiosis in SIVmac251 Infected, cART-treated Macaques.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2022
    Article
  12. Article
  13. Early treatment with anti-αFrontiers in immunology · 2022
    Article
  14. Microbiome Studies in Non-human Primates.Current HIV/AIDS reports · 2021
    Review
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Summer SiddiquiTulane National Primate Research Center, Covington, LA, 70433, USA.
Duran BaoDepartment of Biostatistics and Data Science, School of Public Health and Tropical Medicine, Tulane University, New Orleans, LA, 70112, USA.
Lara Doyle-MeyersTulane National Primate Research Center, Covington, LA, 70433, USA.
Jason DufourTulane National Primate Research Center, Covington, LA, 70433, USA.
Yuntao WuDepartment of Molecular and Microbiology, National Center for Biodefense and Infectious Diseases, George Mason University, Manassas, VA, 20110, USA.
Yao-Zhong LiuDepartment of Biostatistics and Data Science, School of Public Health and Tropical Medicine, Tulane University, New Orleans, LA, 70112, USA.
Binhua LingTulane National Primate Research Center, Covington, LA, 70433, USA. bling@txbiomed.org.
Tulane University · USGeorge Mason University · USTexas Biomedical Research Institute · US

Funding

Tulane NPRC SPF Sheltered Outdoor Enclosure ExpansionP51OD011104 · OD · TULANE UNIVERSITY OF LOUISIANA · PI L Lee HAMM · 2012 to 2026
$142.4M
Eradication of latent SIV from the CNSR01NS104016 · NINDS · TULANE UNIVERSITY OF LOUISIANA · PI LING, BINHUA "JULIE", MACLEAN, ANDREW G · 2017 to 2021
$3.7M
CNS Myeloid Cells as SIV Reservoirs: Persistent Infection and ReboundR01MH116844 · NIMH · TULANE UNIVERSITY OF LOUISIANA · PI LING, BINHUA "JULIE" · 2018 to 2022
$3.4M
Validation of the Rev-dependent vector for targeting SIV macrophage reservoirsR01MH102144 · NIMH · GEORGE MASON UNIVERSITY · PI WU, YUNTAO · 2014 to 2018
$3.3M
Identification and eradication of HIV tissue reservoirs in a relevant animal modeR01AI093307 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI LING, BINHUA "JULIE" · 2011 to 2013
$2.4M
NIAID NIH HHS R01 AI093307NIH HHS P51 OD011104NIMH NIH HHS R01 MH102144NIMH NIH HHS R01 MH116844NINDS NIH HHS R01 NS104016
6 · The paper itself

Abstract

Gut dysbiosis and microbial translocation are associated with chronic systemic immune activation and inflammation in HIV-1 infection. However, the extent of restoration of gut microbiota in HIV-1 patients with short or long-term antiretroviral therapy (ART) is unclear. To understand the impact of ART on the gut microbiota, we used the rhesus macaque model of SIV infection to characterize and compare the gut microbial community upon SIV infection and during ART. We observed altered taxonomic compositions of gut microbiota communities upon SIV infection and at different time points of ART. SIV-infected animals showed decreased diversity of gut microbiome composition, while the ART group appeared to recover towards the diversity level of the healthy control. Animals undergoing ART for various lengths of time were observed to have differential gut bacterial abundance across different time points. In addition, increased blood lipopolysaccharide (LPS) levels during SIV infection were reduced to near normal upon ART, indicating that microbial translocation and immune activation can be improved during therapy. In conclusion, while short ART may be related to transient increase of certain pathogenic bacterial microbiome, ART may promote microbiome diversity compromised by SIV infection, improve the gut microbiota towards the healthy compositions and alleviate immune activation.

Indexed as

Simian Immunodeficiency VirusAnimalsAntiretroviral Therapy, Highly ActiveBiodiversityBiomarkersDuration of TherapyDysbiosisGastrointestinal MicrobiomeLipopolysaccharidesMacaca mulattaMetagenomeMetagenomicsSimian Acquired Immunodeficiency SyndromeBiomarkersLipopolysaccharides

Identifiers

PMID33149234
PMCPMC7642356
OpenAlexW3096928067

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.