Evidence map›Paper›PMID 33148669›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2021

Integrative Analysis of miRNAs Identifies Clinically Relevant Epithelial and Stromal Subtypes of Head and Neck Squamous Cell Carcinoma.

Jeremiah Holt, Vonn Walter, Xiaoying Yin, David Marron, Matthew D Wilkerson, Hyo Young Choi, Xiaobei Zhao, Heejoon Jo, David Neil Hayes, Yoon Ho Ko

Abstract readValidation Study
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Biomedicines · 2021
    Article
  7. Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jeremiah HoltDivision of Hematology and Oncology, Department of Medicine, Center for Cancer Research, University of Tennessee Health Science Center, Memphis, Tennessee.
Vonn WalterDepartment of Public Health Sciences, Penn State College of Medicine, Hershey, Pennsylvania.ORCID 0000-0001-6114-6714
Xiaoying YinSchool of Medicine, University of North Carolina, Chapel Hill, North Carolina.
David MarronLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina.
Matthew D WilkersonLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina.
Hyo Young ChoiDivision of Hematology and Oncology, Department of Medicine, Center for Cancer Research, University of Tennessee Health Science Center, Memphis, Tennessee.
Xiaobei ZhaoDivision of Hematology and Oncology, Department of Medicine, Center for Cancer Research, University of Tennessee Health Science Center, Memphis, Tennessee.
Heejoon JoDivision of Hematology and Oncology, Department of Medicine, Center for Cancer Research, University of Tennessee Health Science Center, Memphis, Tennessee.
David Neil HayesDivision of Hematology and Oncology, Department of Medicine, Center for Cancer Research, University of Tennessee Health Science Center, Memphis, Tennessee. neil.hayes@uthsc.edu koyoonho@catholic.ac.kr.ORCID 0000-0001-6203-7771
Yoon Ho KoDivision of Oncology, Department of Internal Medicine, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea. neil.hayes@uthsc.edu koyoonho@catholic.ac.kr.ORCID 0000-0002-2506-3740

Funding

UNITS: The UNC / UT National Clinical Trials Network Group Integrated Translational Science Production and Consultation CenterUG1CA233333 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAYES, DAVID N, MERKER, JASON DEREK · 2019 to 2025
$4.8M
Network Group Integrated Translational Science Centers ApplicationU10CA181009 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAYES, DAVID N, PEROU, CHARLES M · 2014 to 2018
$3.4M
Development of a Four-Class, Molecular Subtyping Diagnostic for HPV-negative Head and Neck CancerR01CA211939 · NCI · WASHINGTON UNIVERSITY · PI HAYES, DAVID N, ZEVALLOS, JOSE P. · 2017 to 2021
$2.3M
RNA sequencing analysis of CancerU24CA210988 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAYES, DAVID N, HOADLEY, KATHERINE A. · 2016 to 2020
$2.1M
NCI NIH HHS R01 CA211939NCI NIH HHS U10 CA181009NCI NIH HHS U24 CA210988NCI NIH HHS UG1 CA233333
6 · The paper itself

Abstract

purposeThe objective of this study is to characterize the role of miRNAs in the classification of head and neck squamous cell carcinoma (HNSCC). EXPERIMENTAL

designHere, we analyzed 562 HNSCC samples, 88 from a novel cohort and 474 from The Cancer Genome Atlas, using miRNA microarray and miRNA sequencing, respectively. Using an integrative correlations method followed by miRNA expression-based hierarchical clustering, we validated miRNA clusters across cohorts. Evaluation of clusters by logistic regression and gene ontology approaches revealed subtype-based clinical and biological characteristics.

resultsWe identified two independently validated and statistically significant (

conclusionsWe report a reproducible classification of HNSCC based on miRNA that associates with known pathologically altered pathways and mutations of squamous tumors and is clinically relevant.

Indexed as

Gene Regulatory NetworksAdultAgedAged, 80 and overBiomarkers, TumorCluster AnalysisDNA Copy Number VariationsFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHead and Neck NeoplasmsHumansKaplan-Meier EstimateMaleMicroRNAsMiddle AgedBiomarkers, TumorMicroRNAs

Identifiers

PMID33148669
PMCPMC7854517

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.