ArticleBMC genomics2020
Whole genome analysis of the koa wilt pathogen (Fusarium oxysporum f. sp. koae) and the development of molecular tools for early detection and monitoring.
Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- Population genomics of the Japanese oak wilt pathogen reveals genetic structure mirroring its beetle vector and informs biosecurity risk assessment.BMC genomics · 2026Article
- Towards a Phylogenomic Framework for theInternational journal of molecular sciences · 2026Article
- Article
- Fusarium Genome Sequencing and Assembly.Methods in molecular biology (Clifton, N.J.) · 2025Article
- Identification and molecular detection of the pathogen ofFrontiers in microbiology · 2024Article
- The Genome ofInternational journal of molecular sciences · 2023Article
- Virulence and pathogenicity determinants in whole genome sequence ofFrontiers in microbiology · 2023Article
- Fusarioid community diversity associated with conifer seedlings in forest nurseries across the contiguous USA.Frontiers in plant science · 2023Article
- Chromosome-scale assembly uncovers genomic compartmentation ofFrontiers in microbiology · 2023Article
- Secreted in Xylem Genes: Drivers of Host Adaptation inFrontiers in plant science · 2021Review
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Authors and funding
10 authors.
Funding
Abstract
backgroundDevelopment and application of DNA-based methods to distinguish highly virulent isolates of Fusarium oxysporum f. sp. koae [Fo koae; cause of koa wilt disease on Acacia koa (koa)] will help disease management through early detection, enhanced monitoring, and improved disease resistance-breeding programs.
resultsThis study presents whole genome analyses of one highly virulent Fo koae isolate and one non-pathogenic F. oxysporum (Fo) isolate. These analyses allowed for the identification of putative lineage-specific DNA and predicted genes necessary for disease development on koa. Using putative chromosomes and predicted gene comparisons, Fo koae-exclusive, virulence genes were identified. The putative lineage-specific DNA included identified genes encoding products secreted in xylem (e. g., SIX1 and SIX6) that may be necessary for disease development on koa. Unique genes from Fo koae were used to develop pathogen-specific PCR primers. These diagnostic primers allowed target amplification in the characterized highly virulent Fo koae isolates but did not allow product amplification in low-virulence or non-pathogenic isolates of Fo. Thus, primers developed in this study will be useful for early detection and monitoring of highly virulent strains of Fo koae. Isolate verification is also important for disease resistance-breeding programs that require a diverse set of highly virulent Fo koae isolates for their disease-screening assays to develop disease-resistant koa.
conclusionsThese results provide the framework for understanding the pathogen genes necessary for koa wilt disease and the genetic variation of Fo koae populations across the Hawaiian Islands.
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