Evidence map›Paper›PMID 33147292›Full record

ArticlePloS one2020

Mitogen activated protein kinase (MAPK)-regulated genes with predicted signal peptides function in the Glycine max defense response to the root pathogenic nematode Heterodera glycines.

Prakash M Niraula, Keshav Sharma, Brant T McNeece, Hallie A Troell, Omar Darwish, Nadim W Alkharouf, Katherine S Lawrence, Vincent P Klink

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Frontiers in plant science · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Prakash M NiraulaDepartment of Biological Sciences, Mississippi State University, Mississippi State, MS, United States of America.
Keshav SharmaDepartment of Biological Sciences, Mississippi State University, Mississippi State, MS, United States of America.
Brant T McNeeceDepartment of Biological Sciences, Mississippi State University, Mississippi State, MS, United States of America.
Hallie A TroellDepartment of Biological Sciences, Mississippi State University, Mississippi State, MS, United States of America.
Omar DarwishDepartment of Mathematics and Computer Science, Texas Women's University, Denton, TX, United States of America.
Nadim W AlkharoufDepartment of Computer and Information Sciences, Towson University, Towson, MD, United States of America.
Katherine S LawrenceDepartment of Entomology and Plant Pathology, Auburn University, Auburn, AL, United States of America.
Vincent P KlinkDepartment of Biological Sciences, Mississippi State University, Mississippi State, MS, United States of America.ORCID 0000-0002-7167-4032
Mississippi State University · USAuburn University · USTexas Woman's University · USTowson University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Glycine max has 32 mitogen activated protein kinases (MAPKs), nine of them exhibiting defense functions (defense MAPKs) to the plant parasitic nematode Heterodera glycines. RNA seq analyses of transgenic G. max lines overexpressing (OE) each defense MAPK has led to the identification of 309 genes that are increased in their relative transcript abundance by all 9 defense MAPKs. Here, 71 of those genes are shown to also have measurable amounts of transcript in H. glycines-induced nurse cells (syncytia) produced in the root that are undergoing a defense response. The 71 genes have been grouped into 7 types, based on their expression profile. Among the 71 genes are 8 putatively-secreted proteins that include a galactose mutarotase-like protein, pollen Ole e 1 allergen and extensin protein, endomembrane protein 70 protein, O-glycosyl hydrolase 17 protein, glycosyl hydrolase 32 protein, FASCICLIN-like arabinogalactan protein 17 precursor, secreted peroxidase and a pathogenesis-related thaumatin protein. Functional transgenic analyses of all 8 of these candidate defense genes that employ their overexpression and RNA interference (RNAi) demonstrate they have a role in defense. Overexpression experiments that increase the relative transcript abundance of the candidate defense gene reduces the ability that the plant parasitic nematode Heterodera glycines has in completing its life cycle while, in contrast, RNAi of these genes leads to an increase in parasitism. The results provide a genomic analysis of the importance of MAPK signaling in relation to the secretion apparatus during the defense process defense in the G. max-H. glycines pathosystem and identify additional targets for future studies.

Indexed as

AnimalsBase SequenceComputational BiologyGene OntologyGlycine maxMitogen-Activated Protein KinasesPlant DiseasesPlant RootsProtein Sorting SignalsRNA InterferenceMitogen-Activated Protein KinasesProtein Sorting Signals

Identifiers

PMID33147292
PMCPMC7641413
OpenAlexW3094654414

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.