Evidence map›Paper›PMID 33145727›Full record

ArticleGenes & genomics2020

Genome-wide investigation of a Korean synthetic breed, Woori-Heukdon using the Illumina PorcineSNP60K BeadChip.

Yong-Min Kim, Ha-Seung Seong, Jung-Jae Lee, Da-Hye Son, Jin-Su Kim, Soo-Jin Sa, Young-Sin Kim, Tae-Jeong Choi, Kyu-Ho Cho, Joon-Ki Hong and 2 more

Abstract read
PubMed Publisher
In one paragraph

Article in Genes & genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Genetic Differentiation among Livestock Breeds-Values for FAnimals : an open access journal from MDPI · 2022
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Yong-Min KimRural Development Administration, National Institute of Animal Science, Cheonan, 331-801, Republic of Korea.
Ha-Seung SeongCollege of Animal Life Sciences, Kangwon National University, Chuncheon, 24341, Republic of Korea.
Jung-Jae LeeJung P & C Institute, Inc., 1504 U-TOWER, Yongin, 16950, Republic of Korea.
Da-Hye SonDarby Genetics, Anseong, 7381-8, Republic of Korea.
Jin-Su KimCollege of Animal Life Sciences, Kangwon National University, Chuncheon, 24341, Republic of Korea.
Soo-Jin SaRural Development Administration, National Institute of Animal Science, Cheonan, 331-801, Republic of Korea.
Young-Sin KimRural Development Administration, National Institute of Animal Science, Cheonan, 331-801, Republic of Korea.
Tae-Jeong ChoiRural Development Administration, National Institute of Animal Science, Cheonan, 331-801, Republic of Korea.
Kyu-Ho ChoRural Development Administration, National Institute of Animal Science, Cheonan, 331-801, Republic of Korea.
Joon-Ki HongRural Development Administration, National Institute of Animal Science, Cheonan, 331-801, Republic of Korea. john8604@korea.kr.
Jung-Woo ChoiCollege of Animal Life Sciences, Kangwon National University, Chuncheon, 24341, Republic of Korea. jungwoo.kor@gmail.com.ORCID 0000-0001-7827-5037
Eun-Seok ChoRural Development Administration, National Institute of Animal Science, Cheonan, 331-801, Republic of Korea. segi0486@korea.kr.
Kangwon National University · KRRural Development Administration · KR

Funding

Kangwon National University (KR) 520170246Rural Development Administration PJ01263602
6 · The paper itself

Abstract

backgroundWoori-Heukdon (KWH) is a Korean synthetic pig breed generated using Chookjin-Duroc (KCD), Chookjin-Chamdon (KCC), and their crossbreds. Currently, there is a severe lack of studies investigating the Korean breed populations including wild boars (KWB) throughout the genome.

objectiveThis study was performed to investigate the genetic characteristics of Korean pig populations at the genome-wide level.

methodsUsing the SNP dataset derived from genotyped and downloaded datasets using the Illumina PorcineSNP60K BeadChip, we compared the genomes of 532 individuals derived from 23 pig breeds to assess the genetic diversity, inbreeding coefficient, genetic differentiation, and population structure.

resultsKWB showed the lowest average expected heterozygosity (H

conclusionThis study showed that Korean native pigs, KCC have genetic differences in comparison with Chinese and Western pigs; despite some historical records and recent genetic studies, we could not find any clear evidence that KCC was significantly influenced by Chinese or Western breeds in this study. We also verified the theoretical genomic composition of KWH at the molecular level in structure analyses. To our knowledge, this is the first genomic study to investigate the genomic characteristics of KWH and KCC.

Indexed as

GenomicsPolymorphism, Single NucleotideAnimalsGenetics, PopulationGenetic VariationInbreedingSequence Analysis, DNASus scrofaChookjin-chamdonChookjin-durocGenotypingPopulation structureWoori-heukdon

Identifiers

PMID33145727
OpenAlexW3097270842

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.