ArticleNature communications2020
Revealing fine-scale spatiotemporal differences in SARS-CoV-2 introduction and spread.
Open access · goldAbstract read
In one paragraph
Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.
0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 12% of its field
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
32 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.
- The methodologies to assess the effectiveness of non-pharmaceutical interventions during COVID-19: a systematic review.European journal of epidemiology · 2022Pooled it
- Implementation of SARS-CoV-2 genomic surveillance during the COVID-19 pandemic through an academic-public health collaboration in southeast Michigan.Scientific reports · 2026Article
- Model predicted human mobility explains COVID-19 transmission in urban space without behavioral data.Scientific reports · 2025Article
- SARS-CoV-2 introductions to the island of Ireland: a phylogenetic and geospatiotemporal study of infection dynamics.Genome medicine · 2024Article
- Integrating Contact Tracing Data to Enhance Outbreak Phylodynamic Inference: A Deep Learning Approach.Molecular biology and evolution · 2024Article
- Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county.PLoS pathogens · 2024Article
- Modeling target-density-based cull strategies to contain foot-and-mouth disease outbreaks.PeerJ · 2024Article
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- Metagenomic sequencing detects human respiratory and enteric viruses in air samples collected from congregate settings.Scientific reports · 2023Article
- Metagenomic sequencing detects human respiratory and enteric viruses in air samples collected from congregate settings.medRxiv : the preprint server for health sciences · 2023Article
- Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementations.Systematic biology · 2023Article
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- Genomic surveillance identifies SARS-CoV-2 transmission patterns in local university populations, Wisconsin, USA, 2020-2022.Microbial genomics · 2023Article
- TransCode: Uncovering COVID-19 transmission patterns via deep learning.Infectious diseases of poverty · 2023Article
- Phylogenetic and phylodynamic approaches to understanding and combating the early SARS-CoV-2 pandemic.Nature reviews. Genetics · 2022Review
- A single early introduction governed viral diversity in the second wave of SARS-CoV-2 epidemic in Hungary.Virus evolution · 2022Article
- Online Phylogenetics using Parsimony Produces Slightly Better Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies thanbioRxiv : the preprint server for biology · 2022Article
- Dynamics of SARS-CoV-2 Alpha (B.1.1.7) variant spread: The wastewater surveillance approach.Environmental research · 2022Article
- Statistical Challenges in Tracking the Evolution of SARS-CoV-2.Statistical science : a review journal of the Institute of Mathematical Statistics · 2022Article
- Meteorological factors and non-pharmaceutical interventions explain local differences in the spread of SARS-CoV-2 in Austria.PLoS computational biology · 2022Article
Corrections and comments
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Authors and funding
24 authors at 3 institutions in 1 country.
Gage K MorenoDepartment of Pathology and Laboratory Medicine, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0003-4738-5318
Katarina M BraunDepartment of Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI, USA.
Kasen K RiemersmaDepartment of Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI, USA.
Michael A MartinPopulation Biology, Ecology, and Evolution Graduate Program, Laney Graduate School, Emory University, Atlanta, GA, USA.ORCID 0000-0002-9689-4066
Peter J HalfmannDepartment of Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0002-1648-1625
Chelsea M CrooksDepartment of Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0003-3874-4577
Trent PrallDepartment of Pathology and Laboratory Medicine, University of Wisconsin-Madison, Madison, WI, USA.
David BakerDepartment of Pathology and Laboratory Medicine, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0002-6811-8238
John J BaczenasDepartment of Pathology and Laboratory Medicine, University of Wisconsin-Madison, Madison, WI, USA.
Anna S HeffronDepartment of Pathology and Laboratory Medicine, University of Wisconsin-Madison, Madison, WI, USA.
Mitchell RamutaDepartment of Pathology and Laboratory Medicine, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0003-2134-610X
Manjeet KhubbarCity of Milwaukee Health Department Laboratory, Milwaukee, WI, USA.
Andrea M WeilerDepartment of Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI, USA.
Molly A AccolaUniversity of Wisconsin School of Medicine and Public Health, Madison, WI, USA.
William M RehrauerUniversity of Wisconsin School of Medicine and Public Health, Madison, WI, USA.
Shelby L O'ConnorDepartment of Pathology and Laboratory Medicine, University of Wisconsin-Madison, Madison, WI, USA.
Nasia SafdarDepartment of Medicine, Division of Infectious Diseases, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.
Caitlin S PepperellDepartment of Medicine, Division of Infectious Diseases, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.ORCID 0000-0002-6324-1333
Trivikram DasuCity of Milwaukee Health Department Laboratory, Milwaukee, WI, USA.
Sanjib BhattacharyyaCity of Milwaukee Health Department Laboratory, Milwaukee, WI, USA.
Yoshihiro KawaokaDepartment of Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0001-5061-8296
Katia KoellePopulation Biology, Ecology, and Evolution Graduate Program, Laney Graduate School, Emory University, Atlanta, GA, USA.
David H O'ConnorDepartment of Pathology and Laboratory Medicine, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0003-2139-470X
Thomas C FriedrichDepartment of Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI, USA. thomasf@primate.wisc.edu.ORCID 0000-0001-9831-6895
University of Wisconsin–Madison · USMilwaukee Health Department · USEmory University · US
Funding
WNPRC Supplemental Request for Nonhuman Primate Enclosures to Equip HIV/AIDS-Related Research FacilitiesP51OD011106 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI Dorota A. Grejner-Brzezinska · 2012 to 2026
$150.7MResearch Training for Computation and Informatics in Biology and MedicineT15LM007359 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI Mark W. Craven, Colin Noel Dewey · 2002 to 2026
$22.6MINTEGRATED TRAINING FOR PHYSICIAN-SCIENTISTST32GM008692 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BURKARD, MARK E · 1998 to 2020
$10.3MDrifting to victory: resolving the paradox of M.tuberculosis evolutionR01AI113287 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI Caitlin S Pepperell · 2015 to 2026
$6.5MIntegrated Training For Physician-ScientistsT32GM140935 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Anna Huttenlocher, Jeniel E Nett · 2021 to 2026
$6.5MParasitology and Vector Biology Training ProgramT32AI007414 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI Lyric Colleen Bartholomay · 1992 to 2026
$4.5MGraduate Training in Cellular and Molecular Pathogenesis of Human DiseasesT32GM135119 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Zsuzsanna Fabry · 2020 to 2026
$2.2MGraduate Training In Cellular And Molecular Pathogenesis Of Human DiseasesT32GM081061 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FABRY, ZSUZSANNA · 2010 to 2019
$1.8MDefining the role of genetic drift in within-host influenza evolutionF30AI145182 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI BRAUN, KATARINA M · 2020 to 2022
$95kNIAID NIH HHS F30 AI145182NIAID NIH HHS R01 AI113287NIAID NIH HHS T32 AI007414NIGMS NIH HHS T32 GM008692NIGMS NIH HHS T32 GM081061NIGMS NIH HHS T32 GM135119NIGMS NIH HHS T32 GM140935NIH HHS P51 OD011106NLM NIH HHS T15 LM007359
Abstract
Evidence-based public health approaches that minimize the introduction and spread of new SARS-CoV-2 transmission clusters are urgently needed in the United States and other countries struggling with expanding epidemics. Here we analyze 247 full-genome SARS-CoV-2 sequences from two nearby communities in Wisconsin, USA, and find surprisingly distinct patterns of viral spread. Dane County had the 12
Indexed as
BetacoronavirusCoronavirus InfectionsCOVID-19Genome, ViralGeographyHumansMass ScreeningMolecular EpidemiologyPandemicsPneumonia, ViralPsychological DistanceRespiratory Protective DevicesSARS-CoV-2United StatesWisconsin
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.