Evidence map›Paper›PMID 33144392›Full record

ArticleG3 (Bethesda, Md.)2020

High-Density Linkage Maps Based on Genotyping-by-Sequencing (GBS) Confirm a Chromosome-Level Genome Assembly and Reveal Variation in Recombination Rate for the Pacific Oyster

Xiaoshen Yin, Alberto Arias-Pérez, Tevfik Hamdi Kitapci, Dennis Hedgecock

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Xiaoshen YinDepartment of Biological Sciences, University of Southern California, Los Angeles, California, 90089 xyin.aqua@gmail.com.ORCID 0000-0002-2687-4473
Alberto Arias-PérezDepartment of Biological Sciences, University of Southern California, Los Angeles, California, 90089.ORCID 0000-0001-8967-4519
Tevfik Hamdi KitapciDepartment of Biological Sciences, University of Southern California, Los Angeles, California, 90089.ORCID 0000-0001-8910-0224
Dennis HedgecockDepartment of Biological Sciences, University of Southern California, Los Angeles, California, 90089.ORCID 0000-0002-3995-646X
Purdue University West Lafayette · USUniversidad de Cádiz · ESUniversity of Southern California · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Studies of linkage and linkage mapping have advanced genetic and biological knowledge for over 100 years. In addition to their growing role, today, in mapping phenotypes to genotypes, dense linkage maps can help to validate genome assemblies. Previously, we showed that 40% of scaffolds in the first genome assembly for the Pacific oyster

Indexed as

CrassostreaAnimalsChromosome MappingChromosomesGenetic LinkageGenotypePolymorphism, Single NucleotideRecombination, Geneticgenome assemblygenotyping-by-sequencinglinkage mappingPacific oyster Crassostrea gigasrecombination rate

Identifiers

PMID33144392
PMCPMC7718752
OpenAlexW3096684177

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.