Evidence map›Paper›PMID 33143657›Full record

ArticleBMC microbiology2020

High-throughput sequencing analysis of the rhizosphere arbuscular mycorrhizal fungi (AMF) community composition associated with Ferula sinkiangensis.

Yunfeng Luo, Zhongke Wang, Yaling He, Guifang Li, Xinhua Lv, Li Zhuang

Abstract read
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Article in BMC microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  14. Variation in Community Structure of the Root-Associated Fungi ofJournal of fungi (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yunfeng LuoCollege of life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China.
Zhongke WangCollege of life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China.
Yaling HeCollege of life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China.
Guifang LiCollege of life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China.
Xinhua LvCollege of life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China.
Li ZhuangCollege of life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China. z1685199806@163.com.ORCID 0000-0003-1402-5295

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFerula sinkiangensis is an increasingly endangered medicinal plant. Arbuscular mycorrhiza fungi (AMF) are symbiotic microorganisms that live in the soil wherein they enhance nutrient uptake, stress resistance, and pathogen defense in host plants. While such AMF have the potential to contribute to the cultivation of Ferula sinkiangensis, the composition of AMF communities associated with Ferula sinkiangensis and the relationship between these fungi and other pertinent abiotic factors still remains to be clarified.

resultsHerein, we collected rhizosphere and surrounding soil samples at a range of depths (0-20, 20-40, and 40-60 cm) and a range of slope positions (bottom, middle, top). These samples were then subjected to analyses of soil physicochemical properties and high-throughput sequencing (Illumina MiSeq). We determined that Glomus and Diversispora species were highly enriched in all samples. We further found that AMF diversity and richness varied significantly as a function of slope position, with this variation primarily being tied to differences in relative Glomus and Diversispora abundance. In contrast, no significant relationship was observed between soil depth and overall AMF composition, although some AMF species were found to be sensitive to soil depth. Many factors significantly affected AMF community composition, including organic matter content, total nitrogen, total potassium, ammonium nitrogen, nitrate nitrogen, available potassium, total dissolvable salt levels, pH, soil water content, and slope position. We further determined that Shannon diversity index values in these communities were positively correlated with total phosphorus, nitrate-nitrogen levels, and pH values (P < 0.05), whereas total phosphorus, total dissolvable salt levels, and pH were positively correlated with Chao1 values (P < 0.05).

conclusionIn summary, our data revealed that Glomus and Diversispora are key AMF genera found within Ferula sinkiangensis rhizosphere soil. These fungi are closely associated with specific environmental and soil physicochemical properties, and these soil sample properties also differed significantly as a function of slope position (P < 0.05). Together, our results provide new insights regarding the relationship between AMF species and Ferula sinkiangensis, offering a theoretical basis for further studies of their development.

Indexed as

MycobiomeRhizosphereBiodiversityDNA, FungalFerulaGlomeromycotaHigh-Throughput Nucleotide SequencingMycorrhizaePlants, MedicinalSequence Analysis, DNASoilSoil MicrobiologyDNA, FungalSoilArbuscular mycorrhizal fungi (AMF)Community compositionDiversityFerula sinkiangensisIllumina MiSeqSoil physiochemical

Identifiers

PMID33143657
PMCPMC7640387

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.