Evidence map›Paper›PMID 33142748›Full record

ArticleGenes2020

Genome-Wide Analysis of Prognostic Alternative Splicing Signature and Splicing Factors in Lung Adenocarcinoma.

Ya-Sian Chang, Siang-Jyun Tu, Hui-Shan Chiang, Ju-Chen Yen, Ya-Ting Lee, Hsin-Yuan Fang, Jan-Gowth Chang

Open access · goldAbstract read
In one paragraph

Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

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  12. The emerging role of the KCTD proteins in cancer.Cell communication and signaling : CCS · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ya-Sian ChangEpigenome Research Center, China Medical University Hospital, 404 Taichung, Taiwan.
Siang-Jyun TuDepartment of Laboratory Medicine, China Medical University Hospital, 404 Taichung, Taiwan.
Hui-Shan ChiangDepartment of Laboratory Medicine, China Medical University Hospital, 404 Taichung, Taiwan.
Ju-Chen YenEpigenome Research Center, China Medical University Hospital, 404 Taichung, Taiwan.
Ya-Ting LeeEpigenome Research Center, China Medical University Hospital, 404 Taichung, Taiwan.
Hsin-Yuan FangDepartment of Thoracic Surgery, China Medical University Hospital, 404 Taichung, Taiwan.
Jan-Gowth ChangEpigenome Research Center, China Medical University Hospital, 404 Taichung, Taiwan.ORCID 0000-0003-0375-1427
China Medical University · TWAsia University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Analysis of The Cancer Genome Atlas data revealed that alternative splicing (AS) events could serve as prognostic biomarkers in various cancer types. This study examined lung adenocarcinoma (LUAD) tissues for AS and assessed AS events as potential indicators of prognosis in our cohort. RNA sequencing and bioinformatics analysis were performed. We used SUPPA2 to analyze the AS profiles. Using univariate Cox regression analysis, overall survival (OS)-related AS events were identified. Genes relating to the OS-related AS events were imported into Cytoscape, and the CytoHubba application was run. OS-related splicing factors (SFs) were explored using the log-rank test. The relationship between the percent spliced-in value of the OS-related AS events and SF expression was identified by Spearman correlation analysis. We found 1957 OS-related AS events in 1151 genes, and most were protective factors. Alternative first exon splicing was the most frequent type of splicing event. The hub genes in the gene network of the OS-related AS events were

Indexed as

Adenocarcinoma of LungAdultAlternative SplicingBiomarkers, TumorCohort StudiesComputational BiologyDatabases, GeneticFemaleGene ExpressionGene Expression ProfilingGene Expression Regulation, NeoplasticGene Regulatory NetworksGenome-Wide Association StudyHumansLung NeoplasmsMaleBiomarkers, TumorRNA-Binding ProteinsRNA, MessengerRNA Splicing Factorsalternative splicinglung adenocarcinomaRNA sequencingsplicing factor

Identifiers

PMID33142748
PMCPMC7693837
OpenAlexW3095701387

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.