Evidence map›Paper›PMID 33141820›Full record

ArticlePloS one2020

Bridging of nucleosome-proximal DNA double-strand breaks by PARP2 enhances its interaction with HPF1.

Guillaume Gaullier, Genevieve Roberts, Uma M Muthurajan, Samuel Bowerman, Johannes Rudolph, Jyothi Mahadevan, Asmita Jha, Purushka S Rae, Karolin Luger

Abstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Cryo-EM structure of ALC1 in an open conformation bound to a PARylated nucleosome.Acta crystallographica. Section D, Structural biology · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
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  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Single-molecule force spectroscopy reveals binding and bridging dynamics of PARP1 and PARP2 at DNA double-strand breaks.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. PARP3 Affects Nucleosome Compaction Regulation.International journal of molecular sciences · 2023
    Article
  18. Article
  19. Article
  20. Inhibitors of PARP: Number crunching and structure gazing.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Guillaume GaullierDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, United States of America.ORCID 0000-0003-3405-6021
Genevieve RobertsDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, United States of America.
Uma M MuthurajanDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, United States of America.
Samuel BowermanDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, United States of America.
Johannes RudolphDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, United States of America.
Jyothi MahadevanDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, United States of America.
Asmita JhaDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, United States of America.
Purushka S RaeDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, United States of America.
Karolin LugerDepartment of Biochemistry, University of Colorado Boulder, Boulder, CO, United States of America.ORCID 0000-0001-5136-5331

Funding

TRAINING IN SIGNAL TRANSDUCTION &CELL CYCLE REGULATIONT32GM008759 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI AHN, NATALIE G. · 2000 to 2020
$5.9M
Structure and Mechanism of Chromatin-Bound PARP1R01CA218255 · NCI · UNIVERSITY OF COLORADO · PI Karolin Luger · 2017 to 2026
$4.5M
Howard Hughes Medical InstituteNCI NIH HHS R01 CA218255NIGMS NIH HHS T32 GM008759
6 · The paper itself

Abstract

Poly(ADP-ribose) Polymerase 2 (PARP2) is one of three DNA-dependent PARPs involved in the detection of DNA damage. Upon binding to DNA double-strand breaks, PARP2 uses nicotinamide adenine dinucleotide to synthesize poly(ADP-ribose) (PAR) onto itself and other proteins, including histones. PAR chains in turn promote the DNA damage response by recruiting downstream repair factors. These early steps of DNA damage signaling are relevant for understanding how genome integrity is maintained and how their failure leads to genome instability or cancer. There is no structural information on DNA double-strand break detection in the context of chromatin. Here we present a cryo-EM structure of two nucleosomes bridged by human PARP2 and confirm that PARP2 bridges DNA ends in the context of nucleosomes bearing short linker DNA. We demonstrate that the conformation of PARP2 bound to damaged chromatin provides a binding platform for the regulatory protein Histone PARylation Factor 1 (HPF1), and that the resulting HPF1•PARP2•nucleosome complex is enzymatically active. Our results contribute to a structural view of the early steps of the DNA damage response in chromatin.

Indexed as

DNA Breaks, Double-StrandedAmino Acid SubstitutionCarrier ProteinsCryoelectron MicroscopyHumansIn Vitro TechniquesModels, MolecularMutant ProteinsNuclear ProteinsNucleosomesPoint MutationPoly(ADP-ribose) PolymerasesProtein BindingProtein ConformationRecombinant ProteinsCarrier ProteinsHPF1 protein, humanMutant ProteinsNuclear ProteinsNucleosomesPARP2 protein, humanPoly(ADP-ribose) PolymerasesRecombinant Proteins

Identifiers

PMID33141820
PMCPMC7608914

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.