Evidence map›Paper›PMID 33141008›Full record

ArticleThe Journal of general virology2021

A novel substitution in NS5A enhances the resistance of hepatitis C virus genotype 3 to daclatasvir.

Guilherme Rodrigues Fernandes Campos, Joseph Ward, Shucheng Chen, Cintia Bittar, João Paulo Vilela Rodrigues, Ana de Lourdes Candolo Martinelli, Fernanda Fernandes Souza, Leonardo Régis Leira Pereira, Paula Rahal, Mark Harris

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in The Journal of general virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Selection dynamics of HCV genotype 3 resistance-associated substitutions under direct-acting antiviral therapy pressure.The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Guilherme Rodrigues Fernandes CamposSão Paulo State University, Institute of Biosciences, Languages and Exact Sciences, São José do Rio Preto, São Paulo State 15054-000, Brazil.
Joseph WardSchool of Molecular and Cellular Biology, Faculty of Biological Sciences, and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK.
Shucheng ChenSchool of Molecular and Cellular Biology, Faculty of Biological Sciences, and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK.
Cintia BittarSão Paulo State University, Institute of Biosciences, Languages and Exact Sciences, São José do Rio Preto, São Paulo State 15054-000, Brazil.
João Paulo Vilela RodriguesUniversity of São Paulo, Ribeirão Preto School of Medicine, Ribeirão Preto, SP 14049-900, Brazil.
Ana de Lourdes Candolo MartinelliUniversity of São Paulo, Ribeirão Preto Faculty of Pharmaceutical Sciences, Ribeirão Preto, SP 14040-903, Brazil.
Fernanda Fernandes SouzaUniversity of São Paulo, Ribeirão Preto Faculty of Pharmaceutical Sciences, Ribeirão Preto, SP 14040-903, Brazil.
Leonardo Régis Leira PereiraSchool of Molecular and Cellular Biology, Faculty of Biological Sciences, and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK.
Paula RahalSão Paulo State University, Institute of Biosciences, Languages and Exact Sciences, São José do Rio Preto, São Paulo State 15054-000, Brazil.
Mark HarrisSchool of Molecular and Cellular Biology, Faculty of Biological Sciences, and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK.
University of Leeds · GBUniversidade Estadual Paulista (Unesp) · BRUniversidade de Ribeirão Preto · BRUniversidade de São Paulo · BR

Funding

Medical Research Council MR/S001026/1
6 · The paper itself

Abstract

Hepatitis C virus (HCV) genotype 3 presents a high level of both baseline and acquired resistance to direct-acting antivirals (DAAs), particularly those targeting the NS5A protein. To understand this resistance we studied a cohort of Brazilian patients treated with the NS5A DAA, daclatasvir and the nucleoside analogue, sofosbuvir. We observed a novel substitution at NS5A amino acid residue 98 [serine to glycine (S98G)] in patients who relapsed post-treatment. The effect of this substitution on both replication fitness and resistance to DAAs was evaluated using two genotype 3 subgenomic replicons. S98G had a modest effect on replication, but in combination with the previously characterized resistance-associated substitution (RAS), Y93H, resulted in a significant increase in daclatasvir resistance. This result suggests that combinations of substitutions may drive a high level of DAA resistance and provide some clues to the mechanism of action of the NS5A-targeting DAAs.

Indexed as

Antiviral AgentsBrazilCarbamatesCell Line, TumorCohort StudiesDrug Resistance, ViralDrug Therapy, CombinationGenotypeHepacivirusHepatitis CHumansImidazolesMutationPyrrolidinesRecurrenceRNA-Dependent RNA PolymeraseAntiviral AgentsCarbamatesdaclatasvirImidazolesNS-5 protein, hepatitis C virusPyrrolidinesRNA-Dependent RNA PolymeraseSofosbuvirValineViral Nonstructural ProteinsDAA resistancegenotype 3hepatitis C virusNS5A

Identifiers

PMID33141008
PMCPMC8116786
OpenAlexW3096393429

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.