Evidence map›Paper›PMID 33140851›Full record

ArticleHepatology (Baltimore, Md.)2021

Genomic Analysis of Vascular Invasion in HCC Reveals Molecular Drivers and Predictive Biomarkers.

Maya S Krishnan, Anand Rajan Kd, Jangho Park, Vinodhini Arjunan, Fernando Jose Garcia Marques, Abel Bermudez, Olivia A Girvan, Nam S Hoang, Jun Yin, Mindie H Nguyen and 4 more

Open access · greenAbstract read
In one paragraph

Article in Hepatology (Baltimore, Md.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed, 1 pooled it
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 1 synthesis or guideline pooled it, 88 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Maya S KrishnanDivision of Oncology, Department of Medicine, Stanford University, Stanford, CA.
Anand Rajan KdDepartment of Pathology, University of Iowa, Iowa City, IA.
Jangho ParkDivision of Oncology, Department of Medicine, Stanford University, Stanford, CA.
Vinodhini ArjunanDivision of Gastroenterology and Hepatology, Department of Medicine, Stanford University, Stanford, CA.
Fernando Jose Garcia MarquesCanary Center at Stanford for Cancer Early Detection, Department of Radiology, Stanford University, Stanford, CA.ORCID 0000-0002-2105-2905
Abel BermudezCanary Center at Stanford for Cancer Early Detection, Department of Radiology, Stanford University, Stanford, CA.
Olivia A GirvanCanary Center at Stanford for Cancer Early Detection, Department of Radiology, Stanford University, Stanford, CA.
Nam S HoangDivision of Interventional Radiology, Department of Radiology, Stanford University, Stanford, CA.
Jun YinDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN.
Mindie H NguyenDivision of Gastroenterology and Hepatology, Department of Medicine, Stanford University, Stanford, CA.ORCID 0000-0002-6275-4989
Nishita KotharyDivision of Interventional Radiology, Department of Radiology, Stanford University, Stanford, CA.
Sharon PitteriCanary Center at Stanford for Cancer Early Detection, Department of Radiology, Stanford University, Stanford, CA.
Dean W FelsherDivision of Oncology, Department of Medicine, Stanford University, Stanford, CA.
Renumathy DhanasekaranDivision of Gastroenterology and Hepatology, Department of Medicine, Stanford University, Stanford, CA.ORCID 0000-0001-8819-7511
Stanford University · USStanford Medicine · USMayo Clinic in Florida · USUniversity of Iowa · US

Funding

Project 4: ImmunovirotherapyP50CA210964 · NCI · MAYO CLINIC ROCHESTER · PI MARK A. MC NIVEN · 2018 to 2026
$20.5M
Targeting the MYC Pathway for the Treatment of CancerR35CA253180 · NCI · STANFORD UNIVERSITY · PI DEAN W FELSHER · 2020 to 2026
$6.9M
Modeling and Predicting Therapeutic Resistance of CancerU01CA188383 · NCI · STANFORD UNIVERSITY · PI FELSHER, DEAN W, GAMBHIR, SANJIV S · 2014 to 2018
$3.2M
Prognostic Metabolic Signatures of Cancers Through Mass Spectrometry ImagingR01CA184384 · NCI · STANFORD UNIVERSITY · PI FELSHER, DEAN W, ZARE, RICHARD N · 2014 to 2018
$2.7M
(PQ7)Multi-scale Analysis of Tumor Microenvironment HeterogeneityR01CA208735 · NCI · STANFORD UNIVERSITY · PI FELSHER, DEAN W · 2017 to 2019
$2.2M
Functional Proteomic Analysis and Biomarker Identification in a Novel Mouse Model of Metastatic Hepatocellular Carcinoma (HCC)K08CA222676 · NCI · STANFORD UNIVERSITY · PI DHANASEKARAN, RENUMATHY · 2018 to 2022
$1.0M
NCI NIH HHS K08 CA222676NCI NIH HHS P50 CA210964NCI NIH HHS R01 CA184384NCI NIH HHS R01 CA208735NCI NIH HHS R35 CA253180NCI NIH HHS U01 CA188383
6 · The paper itself

Abstract

BACKGROUND AND

aimsVascular invasion (VI) is a critical risk factor for HCC recurrence and poor survival. The molecular drivers of vascular invasion in HCC are open for investigation. Deciphering the molecular landscape of invasive HCC will help identify therapeutic targets and noninvasive biomarkers. APPROACH AND

resultsTo this end, we undertook this study to evaluate the genomic, transcriptomic, and proteomic profile of tumors with VI using the multiplatform cancer genome atlas (The Cancer Genome Atlas; TCGA) data (n = 373). In the TCGA Liver Hepatocellular Carcinoma cohort, macrovascular invasion was present in 5% (n = 17) of tumors and microvascular invasion in 25% (n = 94) of tumors. Functional pathway analysis revealed that the MYC oncogene was a common upstream regulator of the mRNA, miRNA, and proteomic changes in VI. We performed comparative proteomic analyses of invasive human HCC and MYC-driven murine HCC and identified fibronectin to be a proteomic biomarker of invasive HCC (mouse fibronectin 1 [Fn1], P = 1.7 × 10

conclusionsOur study evaluates the molecular landscape of tumors with VI, identifying distinct transcriptional, epigenetic, and proteomic changes driven by the MYC oncogene. We show that MYC up-regulates fibronectin expression, which promotes HCC invasiveness. In addition, we identify fibronectin to be a promising noninvasive proteomic biomarker of VI in HCC.

Indexed as

Genes, mycAdultAgedAged, 80 and overAnimalsBiomarkers, TumorCarcinoma, HepatocellularFemaleFibronectinsGenomicsHumansLiver NeoplasmsMaleMiceMice, TransgenicMicroRNAsBiomarkers, TumorFibronectinsFN1 protein, humanMicroRNAs

Identifiers

PMID33140851
PMCPMC8115767
OpenAlexW3095490805

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.