Evidence map›Paper›PMID 33139893›Full record

ArticleNature methods2020

BAcTrace, a tool for retrograde tracing of neuronal circuits in Drosophila.

Sebastian Cachero, Marina Gkantia, Alexander S Bates, Shahar Frechter, Laura Blackie, Amy McCarthy, Ben Sutcliffe, Alessio Strano, Yoshinori Aso, Gregory S X E Jefferis

Open access · greenAbstract read
In one paragraph

Article in Nature methods, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
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  7. The lives of cells, recorded.Nature reviews. Genetics · 2025
    Review
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  12. Review
  13. Timed receptor tyrosine kinase signaling couples the central and a peripheral circadian clock inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. eLife · 2023
    Article
  20. Genetic dissection of intercellular interactions in vivo by membrane-permeable protein.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Sebastian CacheroNeurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK. scachero@mrc-lmb.cam.ac.uk.ORCID http://orcid.org/0000-0002-6828-1211
Marina GkantiaNeurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK.
Alexander S BatesNeurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK.
Shahar FrechterNeurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK.
Laura BlackieNeurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK.ORCID http://orcid.org/0000-0001-7058-2382
Amy McCarthyNeurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK.
Ben SutcliffeNeurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK.
Alessio StranoNeurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK.ORCID http://orcid.org/0000-0002-7364-6553
Yoshinori AsoJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Gregory S X E JefferisNeurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, UK. jefferis@mrc-lmb.cam.ac.uk.ORCID http://orcid.org/0000-0002-0587-9355
MRC Laboratory of Molecular Biology · GBHoward Hughes Medical Institute · US

Funding

Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
DROSOPHILA GENOMICS RESOURCE CENTERP40OD010949 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Andrew Zelhof · 2012 to 2026
$9.4M
European Research Council 211089Howard Hughes Medical InstituteMedical Research Council MC-U105188491Medical Research Council MC_U105188491NIH HHS P40 OD010949NIH HHS P40 OD018537
6 · The paper itself

Abstract

Animal behavior is encoded in neuronal circuits in the brain. To elucidate the function of these circuits, it is necessary to identify, record from and manipulate networks of connected neurons. Here we present BAcTrace (Botulinum-Activated Tracer), a genetically encoded, retrograde, transsynaptic labeling system. BAcTrace is based on Clostridium botulinum neurotoxin A, Botox, which we engineered to travel retrogradely between neurons to activate an otherwise silent transcription factor. We validated BAcTrace at three neuronal connections in the Drosophila olfactory system. We show that BAcTrace-mediated labeling allows electrophysiological recording of connected neurons. Finally, in a challenging circuit with highly divergent connections, BAcTrace correctly identified 12 of 16 connections that were previously observed by electron microscopy.

Indexed as

AnimalsBotulinum Toxins, Type ACells, CulturedClostridium botulinumDrosophila melanogasterMushroom BodiesOlfactory BulbOlfactory Receptor NeuronsBotulinum Toxins, Type A

Identifiers

PMID33139893
PMCPMC7610425
OpenAlexW3095729435

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.