Evidence map›Paper›PMID 33139741›Full record

ArticleNature communications2020

Epigenetic conflict on a degenerating Y chromosome increases mutational burden in Drosophila males.

Kevin H-C Wei, Lauren Gibilisco, Doris Bachtrog

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  6. Review
  7. Genomic origins and evolution of neo-sex chromosomes in Pacific Island birds.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Polymorphic transposable elements contribute to variation in recombination landscapes.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
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  11. Article
  12. Article
  13. Review
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  16. Transposable element and host silencing activity in gigantic genomes.Frontiers in cell and developmental biology · 2023
    Article
  17. Article
  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kevin H-C WeiDepartment of Integrative Biology, University of California Berkeley, Berkeley, CA, 94720, USA.ORCID 0000-0002-1694-9582
Lauren GibiliscoDepartment of Integrative Biology, University of California Berkeley, Berkeley, CA, 94720, USA.
Doris BachtrogDepartment of Integrative Biology, University of California Berkeley, Berkeley, CA, 94720, USA. dbachtrog@berkeley.edu.ORCID 0000-0001-9724-9467
University of California, Berkeley · US

Funding

The formation of Heterochromatin on evolving Y chromosomesR01GM101255 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Doris Bachtrog · 2015 to 2026
$4.9M
The evolution of dosage compensation in DrosophilaR01GM076007 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BACHTROG, DORIS · 2006 to 2020
$3.6M
Aging and the evolution of the sex-specific chromatin structure in DrosophilaR56AG057029 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI BACHTROG, DORIS · 2017 to 2017
$683k
NIA NIH HHS R56 AG057029NIGMS NIH HHS R01 GM076007NIGMS NIH HHS R01 GM101255
6 · The paper itself

Abstract

Large portions of eukaryotic genomes consist of transposable elements (TEs), and the establishment of transcription-repressing heterochromatin during early development safeguards genome integrity in Drosophila. Repeat-rich Y chromosomes can act as reservoirs for TEs ('toxic' Y effect), and incomplete epigenomic defenses during early development can lead to deleterious TE mobilization. Here, we contrast the dynamics of early TE activation in two Drosophila species with vastly different Y chromosomes of different ages. Zygotic TE expression is elevated in male embryos relative to females in both species, mostly due to expression of Y-linked TEs. Interestingly, male-biased TE expression diminishes across development in D. pseudoobscura, but remains elevated in D. miranda, the species with the younger and larger Y chromosome. The repeat-rich Y of D. miranda still contains many actively transcribed genes, which compromise the formation of silencing heterochromatin. Elevated TE expression results in more de novo insertions of repeats in males compared to females. This lends support to the idea that the 'toxic' Y chromosome can create a mutational burden in males when genome-wide defense mechanisms are compromised, and suggests a previously unappreciated epigenetic conflict on evolving Y chromosomes between transcription of essential genes and silencing of selfish DNA.

Indexed as

Gene SilencingTranscription, GeneticAnimalsDNA Transposable ElementsDrosophilaFemaleHeterochromatinLinear ModelsMaleModels, GeneticMutationSex FactorsY ChromosomeZygoteDNA Transposable ElementsHeterochromatin

Identifiers

PMID33139741
PMCPMC7608633
OpenAlexW3095771934

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.