Evidence map›Paper›PMID 33139719›Full record

ArticleNature communications2020

Gamma estimator of Jarzynski equality for recovering binding energies from noisy dynamic data sets.

Zhifeng Kuang, Kristi M Singh, Daniel J Oliver, Patrick B Dennis, Carole C Perry, Rajesh R Naik

Abstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zhifeng KuangAir Force Research Laboratory, Wright-Patterson Air Force Base, OH, 45433, USA.
Kristi M SinghAir Force Research Laboratory, Wright-Patterson Air Force Base, OH, 45433, USA.
Daniel J OliverBiomolecular and Materials Interface Research Group, Interdisciplinary Biomedical Research Centre, School of Science and Technology, Nottingham Trent University, Clifton Lane, Nottingham, NG11 8NS, UK.ORCID 0000-0001-7877-0900
Patrick B DennisAir Force Research Laboratory, Wright-Patterson Air Force Base, OH, 45433, USA.
Carole C PerryBiomolecular and Materials Interface Research Group, Interdisciplinary Biomedical Research Centre, School of Science and Technology, Nottingham Trent University, Clifton Lane, Nottingham, NG11 8NS, UK.ORCID 0000-0003-1517-468X
Rajesh R NaikAir Force Research Laboratory, Wright-Patterson Air Force Base, OH, 45433, USA. rajesh.naik@us.af.mil.ORCID 0000-0002-7677-928X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A fundamental problem in thermodynamics is the recovery of macroscopic equilibrated interaction energies from experimentally measured single-molecular interactions. The Jarzynski equality forms a theoretical basis in recovering the free energy difference between two states from exponentially averaged work performed to switch the states. In practice, the exponentially averaged work value is estimated as the mean of finite samples. Numerical simulations have shown that samples having thousands of measurements are not large enough for the mean to converge when the fluctuation of external work is above 4 k

Identifiers

PMID33139719
PMCPMC7606380

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.