Evidence map›Paper›PMID 33137199›Full record

ArticleNucleic acids research2020

Viral RNA recognition by LGP2 and MDA5, and activation of signaling through step-by-step conformational changes.

Ivana Duic, Hisashi Tadakuma, Yoshie Harada, Ryo Yamaue, Katashi Deguchi, Yuki Suzuki, Shige H Yoshimura, Hiroki Kato, Kunio Takeyasu, Takashi Fujita

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 82 citations in OpenAlex.

  1. Review
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  11. Identifying RNA Sensors in Antiviral Innate Immunity.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  12. Review
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  17. HOIL1 mediates MDA5 activation through ubiquitination of LGP2.bioRxiv : the preprint server for biology · 2024
    Article
  18. Crosstalk between vault RNAs and innate immunity.Molecular biology reports · 2024
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Ivana DuicDivision of Integrated Life Science, Graduate School of Biostudies, Kyoto University, Kyoto 606-8501, Japan.
Hisashi TadakumaDivision of Protein Chemistry, Institute for Protein Research, Osaka University, Osaka 565-0871, Japan.
Yoshie HaradaDivision of Protein Chemistry, Institute for Protein Research, Osaka University, Osaka 565-0871, Japan.
Ryo YamaueDivision of Integrated Life Science, Graduate School of Biostudies, Kyoto University, Kyoto 606-8501, Japan.
Katashi DeguchiDivision of Integrated Life Science, Graduate School of Biostudies, Kyoto University, Kyoto 606-8501, Japan.
Yuki SuzukiFrontier Research Institute for Interdisciplinary Sciences, Tohoku University, Sendai 980-8578, Japan.
Shige H YoshimuraDivision of Integrated Life Science, Graduate School of Biostudies, Kyoto University, Kyoto 606-8501, Japan.
Hiroki KatoLaboratory of Molecular Genetics, Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto 606-8397, Japan.
Kunio TakeyasuDivision of Integrated Life Science, Graduate School of Biostudies, Kyoto University, Kyoto 606-8501, Japan.
Takashi FujitaDivision of Integrated Life Science, Graduate School of Biostudies, Kyoto University, Kyoto 606-8501, Japan.
Kyoto University · JPUniversity of Bonn · DEProtein Research Foundation · JPShanghaiTech University · CNTohoku University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cytoplasmic RIG-I-like receptor (RLR) proteins in mammalian cells recognize viral RNA and initiate an antiviral response that results in IFN-β induction. Melanoma differentiation-associated protein 5 (MDA5) forms fibers along viral dsRNA and propagates an antiviral response via a signaling domain, the tandem CARD. The most enigmatic RLR, laboratory of genetics and physiology (LGP2), lacks the signaling domain but functions in viral sensing through cooperation with MDA5. However, it remains unclear how LGP2 coordinates fiber formation and subsequent MDA5 activation. We utilized biochemical and biophysical approaches to observe fiber formation and the conformation of MDA5. LGP2 facilitated MDA5 fiber assembly. LGP2 was incorporated into the fibers with an average inter-molecular distance of 32 nm, suggesting the formation of hetero-oligomers with MDA5. Furthermore, limited protease digestion revealed that LGP2 induces significant conformational changes on MDA5, promoting exposure of its CARDs. Although the fibers were efficiently dissociated by ATP hydrolysis, MDA5 maintained its active conformation to participate in downstream signaling. Our study demonstrated the coordinated actions of LGP2 and MDA5, where LGP2 acts as an MDA5 nucleator and requisite partner in the conversion of MDA5 to an active conformation. We revealed a mechanistic basis for LGP2-mediated regulation of MDA5 antiviral innate immune responses.

Indexed as

RNA, ViralAdenosine TriphosphateEncephalomyocarditis virusHEK293 CellsHumansImmunity, InnateInterferon-betaInterferon-Induced Helicase, IFIH1Poly I-CPromoter Regions, GeneticProtein ConformationRNA HelicasesRNA VirusesSignal TransductionAdenosine TriphosphateInterferon-betaInterferon-Induced Helicase, IFIH1Poly I-CRNA HelicasesRNA, Viral

Identifiers

PMID33137199
PMCPMC7672446
OpenAlexW3097380113

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.