Evidence map›Paper›PMID 33137177›Full record

ArticleNucleic acids research2020

Altered rRNA processing disrupts nuclear RNA homeostasis via competition for the poly(A)-binding protein Nab2.

Lisbeth-Carolina Aguilar, Biplab Paul, Taylor Reiter, Louis Gendron, Arvind Arul Nambi Rajan, Rachel Montpetit, Christian Trahan, Sebastian Pechmann, Marlene Oeffinger, Ben Montpetit

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Polyadenylated versions of small non-coding RNAs inMicrobial cell (Graz, Austria) · 2024
    Article
  4. Article
  5. Article
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  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Lisbeth-Carolina AguilarDepartment for Systems Biology, Institut de recherches cliniques de Montréal (IRCM), Montréal, QC, Canada.
Biplab PaulDepartment of Cell Biology, University of Alberta, Edmonton, Canada.
Taylor ReiterFood Science Graduate Group, University of California Davis, Davis, CA, USA.
Louis GendronDépartement de biochimie et médecine moléculaire, Université de Montréal, Montréal, QC, Canada.
Arvind Arul Nambi RajanBiochemistry, Molecular, Cellular and Developmental Biology Graduate Group, University of California Davis, Davis, CA, USA.
Rachel MontpetitDepartment of Viticulture and Enology, University of California Davis, Davis, CA, USA.
Christian TrahanDepartment for Systems Biology, Institut de recherches cliniques de Montréal (IRCM), Montréal, QC, Canada.
Sebastian PechmannDépartement de biochimie et médecine moléculaire, Université de Montréal, Montréal, QC, Canada.
Marlene OeffingerDepartment for Systems Biology, Institut de recherches cliniques de Montréal (IRCM), Montréal, QC, Canada.
Ben MontpetitDepartment of Cell Biology, University of Alberta, Edmonton, Canada.
Montreal Clinical Research Institute · CAUniversity of California, Davis · USUniversité de Montréal · CAUniversity of Alberta · CA

Funding

UC Davis MCB T32 Administrative Supplement to Recognize Excellence in Diversity, Equity, Inclusion, and Accessibility (DEIA) MentorshipT32GM007377 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CHEDIN, FREDERIC LOUIS · 1985 to 2023
$9.9M
Function and Regulation of a DEAD-box protein in mRNA ExportR01GM124120 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI MONTPETIT, BENJAMEN H.W. · 2017 to 2021
$2.0M
NIGMS NIH HHS R01 GM124120NIGMS NIH HHS T32 GM007377
6 · The paper itself

Abstract

RNA-binding proteins (RBPs) are key mediators of RNA metabolism. Whereas some RBPs exhibit narrow transcript specificity, others function broadly across both coding and non-coding RNAs. Here, in Saccharomyces cerevisiae, we demonstrate that changes in RBP availability caused by disruptions to distinct cellular processes promote a common global breakdown in RNA metabolism and nuclear RNA homeostasis. Our data shows that stabilization of aberrant ribosomal RNA (rRNA) precursors in an enp1-1 mutant causes phenotypes similar to RNA exosome mutants due to nucleolar sequestration of the poly(A)-binding protein (PABP) Nab2. Decreased nuclear PABP availability is accompanied by genome-wide changes in RNA metabolism, including increased pervasive transcripts levels and snoRNA processing defects. These phenotypes are mitigated by overexpression of PABPs, inhibition of rDNA transcription, or alterations in TRAMP activity. Our results highlight the need for cells to maintain poly(A)-RNA levels in balance with PABPs and other RBPs with mutable substrate specificity across nucleoplasmic and nucleolar RNA processes.

Indexed as

RNA Processing, Post-TranscriptionalCell NucleusExosome Multienzyme Ribonuclease ComplexGuanine Nucleotide Exchange FactorsHomeostasisMutationNuclear ProteinsNucleocytoplasmic Transport ProteinsPolyadenylationRNA-Binding ProteinsRNA PrecursorsRNA, RibosomalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptomeCSL4 protein, S cerevisiaeENP1 protein, S cerevisiaeExosome Multienzyme Ribonuclease ComplexGuanine Nucleotide Exchange FactorsNAB2 protein, S cerevisiaeNuclear ProteinsNucleocytoplasmic Transport ProteinsRNA-Binding ProteinsRNA PrecursorsRNA, RibosomalSaccharomyces cerevisiae ProteinsSRM1 protein, S cerevisiae

Identifiers

PMID33137177
PMCPMC7672433
OpenAlexW3096101105

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.