Evidence map›Paper›PMID 33137168›Full record

ArticlePloS one2020

Detection of SARS-CoV-2 from raw patient samples by coupled high temperature reverse transcription and amplification.

Johannes W P Kuiper, Timo Baade, Marcel Kremer, Ramon Kranaster, Linda Irmisch, Marcus Schuchmann, Johannes Zander, Andreas Marx, Christof R Hauck

Abstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Johannes W P KuiperLehrstuhl Zellbiologie, Universität Konstanz, Konstanz, Germany.
Timo BaadeLehrstuhl Zellbiologie, Universität Konstanz, Konstanz, Germany.
Marcel KremerLabor Dr. Brunner, Konstanz, Germany.
Ramon KranastermyPOLS Biotec GmbH, Konstanz, Germany.
Linda IrmischKlinikum Konstanz, Konstanz, Germany.
Marcus SchuchmannKlinikum Konstanz, Konstanz, Germany.
Johannes ZanderLabor Dr. Brunner, Konstanz, Germany.
Andreas MarxKonstanz Research School Chemical Biology, Universität Konstanz, Konstanz, Germany.
Christof R HauckLehrstuhl Zellbiologie, Universität Konstanz, Konstanz, Germany.ORCID 0000-0002-1005-2141

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SARS-CoV-2 is spreading globally with unprecedented consequences for modern societies. The early detection of infected individuals is a pre-requisite to contain the virus. Currently, purification of RNA from patient samples followed by RT-PCR is the gold standard to assess the presence of this single-strand RNA virus. However, these procedures are time consuming, require continuous supply of specialized reagents, and are prohibitively expensive in resource-poor settings. Here, we report an improved nucleic-acid-based approach to detect SARS-CoV-2 with the ability to detect as little as five viral genome equivalents. The approach delivers results without the need to purify RNA, reduces handling steps, minimizes costs, and allows evaluation by non-specialized equipment. The use of unprocessed swap samples is enabled by employing a heat-stable RNA- and DNA-dependent DNA polymerase, which performs the double task of stringent reverse transcription of RNA at elevated temperatures as well as PCR amplification of a SARS-CoV-2 specific target gene. As results are obtained within 2 hours and can be read-out by a hand-held LED-screen, this novel protocol will be of particular importance for large-scale virus surveillance in economically constrained settings.

Indexed as

BetacoronavirusCoronavirus InfectionsCOVID-19HumansNasopharynxPandemicsPneumonia, ViralReverse Transcriptase Polymerase Chain ReactionRNA, ViralSARS-CoV-2TemperatureRNA, Viral

Identifiers

PMID33137168
PMCPMC7605687

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.