Evidence map›Paper›PMID 33131415›Full record

ArticleRNA biology2021

Identification and characterization of key long non-coding RNAs in the mouse cochlea.

Tal Koffler-Brill, Shahar Taiber, Alejandro Anaya, Mor Bordeynik-Cohen, Einat Rosen, Likhitha Kolla, Naama Messika-Gold, Ran Elkon, Matthew W Kelley, Igor Ulitsky and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. The Genomics of Auditory Function and Disease.Annual review of genomics and human genetics · 2022
    Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Tal Koffler-BrillDepartment of Human Molecular Genetics & Biochemistry, Sackler Faculty of Medicine and Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel.ORCID 0000-0003-3823-1480
Shahar TaiberDepartment of Human Molecular Genetics & Biochemistry, Sackler Faculty of Medicine and Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel.ORCID 0000-0002-0787-4216
Alejandro AnayaLaboratory of Cochlear Development, National Institute on Deafness and Other Communication Disorders, NIH, Bethesda, Maryland, USA.ORCID 0000-0002-3479-3622
Mor Bordeynik-CohenDepartment of Human Molecular Genetics & Biochemistry, Sackler Faculty of Medicine and Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel.ORCID 0000-0002-9735-7596
Einat RosenDepartment of Human Molecular Genetics & Biochemistry, Sackler Faculty of Medicine and Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel.
Likhitha KollaLaboratory of Cochlear Development, National Institute on Deafness and Other Communication Disorders, NIH, Bethesda, Maryland, USA.ORCID 0000-0002-1169-906X
Naama Messika-GoldDepartment of Human Molecular Genetics & Biochemistry, Sackler Faculty of Medicine and Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel.
Ran ElkonDepartment of Human Molecular Genetics & Biochemistry, Sackler Faculty of Medicine and Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel.ORCID 0000-0003-3440-1286
Matthew W KelleyLaboratory of Cochlear Development, National Institute on Deafness and Other Communication Disorders, NIH, Bethesda, Maryland, USA.ORCID 0000-0001-7367-8697
Igor UlitskyDepartment of Biological Regulation, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0003-0555-6561
Karen B AvrahamDepartment of Human Molecular Genetics & Biochemistry, Sackler Faculty of Medicine and Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel.ORCID 0000-0002-4913-251X
Tel Aviv University · ILNational Institute on Deafness and Other Communication Disorders · USWeizmann Institute of Science · IL

Funding

Hair Cell Development in the Mammalian CochleaZIADC000059 · NIDCD · NATIONAL INSTITUTE ON DEAFNESS AND OTHER COMMUNICATION DISORDERS · PI KELLEY, MATTHEW · 2009 to 2025
$41.8M
Hair Cell Development in the Mammalian CochleaZ01DC000059 · NIDCD · NATIONAL INSTITUTE ON DEAFNESS AND OTHER COMMUNICATION DISORDERS · PI KELLEY, MATTHEW W · 2000 to 2008
$1.9M
POSTDOCTORAL RESEARCH TRAINING IN OTOLARYNGOLOGYT32DC000059 · NIDCD · UNIVERSITY OF MINNESOTA TWIN CITIES · PI ANDERSON, JOHN H · 1999 to 2003
$453k
Intramural NIH HHS Z01 DC000059NIDCD NIH HHS T32 DC000059
6 · The paper itself

Abstract

The auditory system is a complex sensory network with an orchestrated multilayer regulatory programme governing its development and maintenance. Accumulating evidence has implicated long non-coding RNAs (lncRNAs) as important regulators in numerous systems, as well as in pathological pathways. However, their function in the auditory system has yet to be explored. Using a set of specific criteria, we selected four lncRNAs expressed in the mouse cochlea, which are conserved in the human transcriptome and are relevant for inner ear function. Bioinformatic characterization demonstrated a lack of coding potential and an absence of evolutionary conservation that represent properties commonly shared by their class members. RNAscope®  analysis of the spatial and temporal expression profiles revealed specific localization to inner ear cells. Sub-cellular localization analysis presented a distinct pattern for each lncRNA and mouse tissue expression evaluation displayed a large variability in terms of level and location. Our findings establish the expression of specific lncRNAs in different cell types of the auditory system and present a potential pathway by which the lncRNA

Indexed as

Genetic LociAnimalsCell LineCochleaComputational BiologyConserved SequenceEmbryo, MammalianGene Expression ProfilingGene Expression RegulationGene Regulatory NetworksHearing Loss, SensorineuralHumansMiceRNA, Long NoncodingTranscriptomelong non-coding RNA GAS5, mouseRNA, Long NoncodingDeafnessHearingInner earLncRNANotch

Identifiers

PMID33131415
PMCPMC8244781
OpenAlexW3097961373

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.