Evidence map›Paper›PMID 33131414›Full record

ArticlemAbs

Isolation of monoclonal antibodies from anti-synthetase syndrome patients and affinity maturation by recombination of independent somatic variants.

Luke Burman, Yeeting E Chong, Sherie Duncan, Anders Klaus, Kaitlyn Rauch, Kristina Hamel, Karine Hervé, Stephanie Pfaffen, David W Collins, Kevin Heyries and 3 more

Abstract read
In one paragraph

Article in mAbs. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
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  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Luke BurmanDiscovery Biology, aTyr Pharma , San Diego, CA, USA.ORCID 0000-0002-8758-8120
Yeeting E ChongDiscovery Biology, aTyr Pharma , San Diego, CA, USA.
Sherie DuncanAbCellera Biologics Inc ., Vancouver, BC, USA.
Anders KlausAbCellera Biologics Inc ., Vancouver, BC, USA.
Kaitlyn RauchDiscovery Biology, aTyr Pharma , San Diego, CA, USA.
Kristina HamelDiscovery Biology, aTyr Pharma , San Diego, CA, USA.
Karine HervéAbCellera Biologics Inc ., Vancouver, BC, USA.
Stephanie PfaffenAbCellera Biologics Inc ., Vancouver, BC, USA.
David W CollinsAbCellera Biologics Inc ., Vancouver, BC, USA.
Kevin HeyriesAbCellera Biologics Inc ., Vancouver, BC, USA.
Leslie NangleDiscovery Biology, aTyr Pharma , San Diego, CA, USA.
Carl HansenAbCellera Biologics Inc ., Vancouver, BC, USA.
David J KingDiscovery Biology, aTyr Pharma , San Diego, CA, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The autoimmune disease known as Jo-1 positive anti-synthetase syndrome (ASS) is characterized by circulating antibody titers to histidyl-tRNA synthetase (HARS), which may play a role in modulating the non-canonical functions of HARS. Monoclonal antibodies to HARS were isolated by single-cell screening and sequencing from three Jo-1 positive ASS patients and shown to be of high affinity, covering diverse epitope space. The immune response was further characterized by repertoire sequencing from the most productive of the donor samples. In line with previous studies of autoimmune repertoires, these antibodies tended to have long complementarity-determining region H3 sequences with more positive-charged residues than average. Clones of interest were clustered into groups with related sequences, allowing us to observe different somatic mutations in related clones. We postulated that these had found alternate structural solutions for high affinity binding, but that mutations might be transferable between clones to further enhance binding affinity. Transfer of somatic mutations between antibodies within the same clonal group was able to enhance binding affinity in a number of cases, including beneficial transfer of a mutation from a lower affinity clone into one of higher affinity. Affinity enhancement was seen with mutation transfer both between related single-cell clones, and directly from related repertoire sequences. To our knowledge, this is the first demonstration of somatic hypermutation transfer from repertoire sequences to further mature

Indexed as

Antibodies, MonoclonalAntibody AffinityAutoantibodiesHistidine-tRNA LigaseHumansImmunologic TechniquesMyositisSomatic Hypermutation, ImmunoglobulinAntibodies, MonoclonalAutoantibodiesHistidine-tRNA LigaseAminoacyl tRNA synthetaseantibodyautoimmune diseasebioinformaticscellular immune responseprotein evolutionrepertoiresingle cell

Identifiers

PMID33131414
PMCPMC7646482

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.