Evidence map›Paper›PMID 33129152›Full record

ArticleMedical image analysis2021

Difficulty-aware hierarchical convolutional neural networks for deformable registration of brain MR images.

Yunzhi Huang, Sahar Ahmad, Jingfan Fan, Dinggang Shen, Pew-Thian Yap

Abstract read
In one paragraph

Article in Medical image analysis, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
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  5. Review
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  8. Decoupled learning for brain image registration.Frontiers in neuroscience · 2023
    Article
  9. [Cascaded multi-level medical image registration method based on transformer].Sheng wu yi xue gong cheng xue za zhi = Journal of biomedical engineering = Shengwu yixue gongchengxue zazhi · 2022
    Article
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  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yunzhi HuangCollege of Biomedical Engineering, Sichuan University, Chengdu 610065, China; Department of Radiology and Biomedical Research Imaging Center (BRIC), University of North Carolina, Chapel Hill, USA.
Sahar AhmadDepartment of Radiology and Biomedical Research Imaging Center (BRIC), University of North Carolina, Chapel Hill, USA.
Jingfan FanBeijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Photonics, Beijing Institute of Technology, Beijing 100081, China.
Dinggang ShenDepartment of Radiology and Biomedical Research Imaging Center (BRIC), University of North Carolina, Chapel Hill, USA; Department of Brain and Cognitive Engineering, Korea University, Seoul, Korea. Electronic address: dinggang.shen@gmail.com.
Pew-Thian YapDepartment of Radiology and Biomedical Research Imaging Center (BRIC), University of North Carolina, Chapel Hill, USA. Electronic address: ptyap@med.unc.edu.

Funding

Longitudinal Mapping of Human Brain Development in the First Years of LifeR01EB008374 · NIBIB · UNIV OF NORTH CAROLINA CHAPEL HILL · PI YAP, PEW-THIAN · 2009 to 2024
$5.1M
Analyzing Large-Scale Neuroimaging Data in Alzheimer's DiseaseRF1AG053867 · NIA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI YAP, PEW-THIAN · 2016 to 2016
$2.5M
NIA NIH HHS RF1 AG053867NIBIB NIH HHS R01 EB008374
6 · The paper itself

Abstract

The aim of deformable brain image registration is to align anatomical structures, which can potentially vary with large and complex deformations. Anatomical structures vary in size and shape, requiring the registration algorithm to estimate deformation fields at various degrees of complexity. Here, we present a difficulty-aware model based on an attention mechanism to automatically identify hard-to-register regions, allowing better estimation of large complex deformations. The difficulty-aware model is incorporated into a cascaded neural network consisting of three sub-networks to fully leverage both global and local contextual information for effective registration. The first sub-network is trained at the image level to predict a coarse-scale deformation field, which is then used for initializing the subsequent sub-network. The next two sub-networks progressively optimize at the patch level with different resolutions to predict a fine-scale deformation field. Embedding difficulty-aware learning into the hierarchical neural network allows harder patches to be identified in the deeper sub-networks at higher resolutions for refining the deformation field. Experiments conducted on four public datasets validate that our method achieves promising registration accuracy with better preservation of topology, compared with state-of-the-art registration methods.

Indexed as

BrainNeural Networks, ComputerAlgorithmsHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingBrain MRICascaded neural networkDeformable registrationDifficulty-aware sampling

Identifiers

PMID33129152
PMCPMC7725910

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.